RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 SCAPERQ9BY12 1400 aa23.39■■□□□ 1.33
HMGN3-201ENST00000275036 CDC42BPBQ9Y5S2 1711 aa23.37■■□□□ 1.33
HMGN3-201ENST00000275036 YEATS2Q9ULM3 1422 aa23.37■■□□□ 1.33
HMGN3-201ENST00000275036 BCORL1Q5H9F3 1711 aa23.36■■□□□ 1.33
HMGN3-201ENST00000275036 ARHGAP5Q13017 1502 aa23.35■■□□□ 1.33
HMGN3-201ENST00000275036 ZFYVE16Q7Z3T8 1539 aa23.35■■□□□ 1.33
HMGN3-201ENST00000275036 PREX2Q70Z35 1606 aa23.34■■□□□ 1.33
HMGN3-201ENST00000275036 CEP162Q5TB80 1403 aa23.33■■□□□ 1.32
HMGN3-201ENST00000275036 EFCAB2Q5VUJ9 269 aa23.32■■□□□ 1.32
HMGN3-201ENST00000275036 MADDQ8WXG6 1647 aa23.31■■□□□ 1.32
HMGN3-201ENST00000275036 HECW2Q9P2P5 1572 aa23.31■■□□□ 1.32
HMGN3-201ENST00000275036 CDC42BPAQ5VT25 1732 aa23.3■■□□□ 1.32
HMGN3-201ENST00000275036 MAGI2Q86UL8 1455 aa23.3■■□□□ 1.32
HMGN3-201ENST00000275036 LOC105371045A0A1W2PR82 267 aa23.29■■□□□ 1.32
HMGN3-201ENST00000275036 PTPRMP28827 1452 aa23.28■■□□□ 1.32
HMGN3-201ENST00000275036 KDM5CP41229 1560 aa23.27■■□□□ 1.32
HMGN3-201ENST00000275036 ABCC1P33527 1531 aa23.26■■□□□ 1.31
HMGN3-201ENST00000275036 ARHGEF12Q9NZN5 1544 aa23.26■■□□□ 1.31
HMGN3-201ENST00000275036 ARID4BQ4LE39 1312 aaPredicted RBP23.26■■□□□ 1.31
HMGN3-201ENST00000275036 ZNF518AQ6AHZ1 1483 aa23.24■■□□□ 1.31
HMGN3-201ENST00000275036 ITSN2Q9NZM3 1697 aa23.23■■□□□ 1.31
HMGN3-201ENST00000275036 RIMS1Q86UR5 1692 aaKnown RBP23.22■■□□□ 1.31
HMGN3-201ENST00000275036 AFAP1Q8N556 730 aa23.22■■□□□ 1.31
HMGN3-201ENST00000275036 TRAPPC8Q9Y2L5 1435 aa23.2■■□□□ 1.3
HMGN3-201ENST00000275036 SAMD9LQ8IVG5 1584 aa23.19■■□□□ 1.3
HMGN3-201ENST00000275036 GPATCH8Q9UKJ3 1502 aaKnown RBP23.19■■□□□ 1.3
HMGN3-201ENST00000275036 ATP10AO60312 1499 aa23.19■■□□□ 1.3
HMGN3-201ENST00000275036 DIP2CQ9Y2E4 1556 aa23.18■■□□□ 1.3
HMGN3-201ENST00000275036 C9orf84Q5VXU9 1444 aa23.17■■□□□ 1.3
HMGN3-201ENST00000275036 ABCA6Q8N139 1617 aa23.17■■□□□ 1.3
HMGN3-201ENST00000275036 MLH3Q9UHC1 1453 aa23.14■■□□□ 1.29
HMGN3-201ENST00000275036 MTUS2Q5JR59 1369 aa23.13■■□□□ 1.29
HMGN3-201ENST00000275036 EHBP1L1Q8N3D4 1523 aa23.13■■□□□ 1.29
HMGN3-201ENST00000275036 SYCP2Q9BX26 1530 aa23.13■■□□□ 1.29
HMGN3-201ENST00000275036 FER1L4A9Z1Z3 1794 aa23.12■■□□□ 1.29
HMGN3-201ENST00000275036 TIAM1Q13009 1591 aa23.12■■□□□ 1.29
HMGN3-201ENST00000275036 MLECQ14165 292 aa23.11■■□□□ 1.29
HMGN3-201ENST00000275036 KIDINS220Q9ULH0 1771 aa23.11■■□□□ 1.29
HMGN3-201ENST00000275036 REREQ9P2R6 1566 aa23.1■■□□□ 1.29
HMGN3-201ENST00000275036 ZNF777Q9ULD5 760 aaPredicted RBP23.09■■□□□ 1.29
HMGN3-201ENST00000275036 CCNB3Q8WWL7 1395 aa23.08■■□□□ 1.29
HMGN3-201ENST00000275036 VPS8Q8N3P4 1428 aa23.06■■□□□ 1.28
HMGN3-201ENST00000275036 LMTK3Q96Q04 1460 aa23.05■■□□□ 1.28
HMGN3-201ENST00000275036 CFDP1Q9UEE9 299 aaPredicted RBP23.04■■□□□ 1.28
HMGN3-201ENST00000275036 HNRNPMP52272 730 aaKnown RBP eCLIP23.03■■□□□ 1.28
HMGN3-201ENST00000275036 MYT1LQ9UL68 1186 aa23.03■■□□□ 1.28
HMGN3-201ENST00000275036 KIAA1107Q9UPP5 1409 aa23.02■■□□□ 1.28
HMGN3-201ENST00000275036 PLPPR3Q6T4P5 718 aa23.01■■□□□ 1.27
HMGN3-201ENST00000275036 AGLP35573 1532 aa23.01■■□□□ 1.27
HMGN3-201ENST00000275036 ZNF644Q9H582 1327 aaPredicted RBP23.01■■□□□ 1.27
HMGN3-201ENST00000275036 INO80Q9ULG1 1556 aaPredicted RBP23.01■■□□□ 1.27
HMGN3-201ENST00000275036 NCOA2Q15596 1464 aa22.99■■□□□ 1.27
HMGN3-201ENST00000275036 PLEKHH2Q8IVE3 1493 aa22.99■■□□□ 1.27
HMGN3-201ENST00000275036 SUPT6HQ7KZ85 1726 aaKnown RBP22.99■■□□□ 1.27
HMGN3-201ENST00000275036 ATP7AQ04656 1500 aa22.98■■□□□ 1.27
HMGN3-201ENST00000275036 MBD5Q9P267 1494 aa22.97■■□□□ 1.27
HMGN3-201ENST00000275036 SPAG9O60271 1321 aaKnown RBP22.95■■□□□ 1.26
HMGN3-201ENST00000275036 LRRC9Q6ZRR7 1453 aa22.93■■□□□ 1.26
HMGN3-201ENST00000275036 CEBPAP49715 358 aaPredicted RBP22.93■■□□□ 1.26
HMGN3-201ENST00000275036 PLXNC1O60486 1568 aa22.93■■□□□ 1.26
HMGN3-201ENST00000275036 C3P01024 1663 aa22.9■■□□□ 1.26
HMGN3-201ENST00000275036 CAMSAP2Q08AD1 1489 aa22.9■■□□□ 1.26
HMGN3-201ENST00000275036 MAP3K1Q13233 1512 aa22.89■■□□□ 1.26
HMGN3-201ENST00000275036 HSPA2P54652 639 aa22.89■■□□□ 1.25
HMGN3-201ENST00000275036 KANK4Q5T7N3 995 aaPredicted RBP22.88■■□□□ 1.25
HMGN3-201ENST00000275036 PREX1Q8TCU6 1659 aa22.87■■□□□ 1.25
HMGN3-201ENST00000275036 A2MP01023 1474 aa22.87■■□□□ 1.25
HMGN3-201ENST00000275036 ADGBQ8N7X0 1667 aa22.85■■□□□ 1.25
HMGN3-201ENST00000275036 CCDC141Q6ZP82 1450 aa22.83■■□□□ 1.25
HMGN3-201ENST00000275036 RTEL1-TNFRSF6BF6WH68 1400 aa22.81■■□□□ 1.24
HMGN3-201ENST00000275036 ARHGEF5Q12774 1597 aa22.8■■□□□ 1.24
HMGN3-201ENST00000275036 MROH2AA6NES4 1674 aa22.79■■□□□ 1.24
HMGN3-201ENST00000275036 ILDR1Q86SU0 546 aaPredicted RBP22.79■■□□□ 1.24
HMGN3-201ENST00000275036 CLTCQ00610 1675 aaKnown RBP22.78■■□□□ 1.24
HMGN3-201ENST00000275036 CNTLNQ9NXG0 1405 aa22.78■■□□□ 1.24
HMGN3-201ENST00000275036 MYOM3Q5VTT5 1437 aa22.74■■□□□ 1.23
HMGN3-201ENST00000275036 UHRF1BP1Q6BDS2 1440 aa22.74■■□□□ 1.23
HMGN3-201ENST00000275036 ESF1Q9H501 851 aaKnown RBP22.74■■□□□ 1.23
HMGN3-201ENST00000275036 DHX29Q7Z478 1369 aaKnown RBP22.73■■□□□ 1.23
HMGN3-201ENST00000275036 SETD1BQ9UPS6 1966 aaKnown RBP22.72■■□□□ 1.23
HMGN3-201ENST00000275036 STRCQ7RTU9 1775 aa22.72■■□□□ 1.23
HMGN3-201ENST00000275036 ZMYM3Q14202 1370 aa22.72■■□□□ 1.23
HMGN3-201ENST00000275036 GGT6Q6P531 493 aa22.71■■□□□ 1.23
HMGN3-201ENST00000275036 MIA2Q96PC5 1412 aa22.7■■□□□ 1.22
HMGN3-201ENST00000275036 MAST1Q9Y2H9 1570 aa22.69■■□□□ 1.22
HMGN3-201ENST00000275036 RSPH4AQ5TD94 716 aa22.68■■□□□ 1.22
HMGN3-201ENST00000275036 NPATQ14207 1427 aa22.67■■□□□ 1.22
HMGN3-201ENST00000275036 APLP2Q06481 763 aa22.67■■□□□ 1.22
HMGN3-201ENST00000275036 PTPRKQ15262 1439 aa22.65■■□□□ 1.22
HMGN3-201ENST00000275036 MYO3AQ8NEV4 1616 aa22.64■■□□□ 1.21
HMGN3-201ENST00000275036 PTPN23Q9H3S7 1636 aa22.62■■□□□ 1.21
HMGN3-201ENST00000275036 KIF3BO15066 747 aa22.62■■□□□ 1.21
HMGN3-201ENST00000275036 TSPY4P0CV99 314 aa22.61■■□□□ 1.21
HMGN3-201ENST00000275036 TSPY10P0CW01 314 aa22.61■■□□□ 1.21
HMGN3-201ENST00000275036 CROCC2H7BZ55 1655 aa22.61■■□□□ 1.21
HMGN3-201ENST00000275036 PPP6R1Q9UPN7 881 aa22.6■■□□□ 1.21
HMGN3-201ENST00000275036 ZNF142P52746 1687 aaPredicted RBP22.6■■□□□ 1.21
HMGN3-201ENST00000275036 KDM5DQ9BY66 1539 aa22.6■■□□□ 1.21
HMGN3-201ENST00000275036 RNF17Q9BXT8 1623 aaKnown RBP22.58■■□□□ 1.21
HMGN3-201ENST00000275036 ABCC5O15440 1437 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms