RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 ARAP3Q8WWN8 1544 aa23.12■■□□□ 1.29
COPS3-201ENST00000268717 TROQ12816 1431 aaPredicted RBP23.12■■□□□ 1.29
COPS3-201ENST00000268717 FGD6Q6ZV73 1430 aa23.11■■□□□ 1.29
COPS3-201ENST00000268717 KIF14Q15058 1648 aa23.1■■□□□ 1.29
COPS3-201ENST00000268717 MYOM3Q5VTT5 1437 aa23.1■■□□□ 1.29
COPS3-201ENST00000268717 CFAP74Q9C0B2 1584 aa23.07■■□□□ 1.28
COPS3-201ENST00000268717 MYO5CQ9NQX4 1742 aa23.06■■□□□ 1.28
COPS3-201ENST00000268717 FANCAO15360 1455 aa23.05■■□□□ 1.28
COPS3-201ENST00000268717 PLCH2O75038 1416 aa23.03■■□□□ 1.28
COPS3-201ENST00000268717 MIA2Q96PC5 1412 aa23.02■■□□□ 1.28
COPS3-201ENST00000268717 AKNAQ7Z591 1439 aa23.01■■□□□ 1.27
COPS3-201ENST00000268717 TCOF1Q13428 1488 aaKnown RBP23■■□□□ 1.27
COPS3-201ENST00000268717 CCER1Q8TC90 406 aaPredicted RBP23■■□□□ 1.27
COPS3-201ENST00000268717 FRMPD1Q5SYB0 1578 aa22.99■■□□□ 1.27
COPS3-201ENST00000268717 RAPGEF3O95398 923 aa22.97■■□□□ 1.27
COPS3-201ENST00000268717 FAM50AQ14320 339 aaKnown RBP22.97■■□□□ 1.27
COPS3-201ENST00000268717 RICTORQ6R327 1708 aa22.97■■□□□ 1.27
COPS3-201ENST00000268717 CDC42BPBQ9Y5S2 1711 aa22.95■■□□□ 1.26
COPS3-201ENST00000268717 DENND4BO75064 1496 aaPredicted RBP22.94■■□□□ 1.26
COPS3-201ENST00000268717 PTPN23Q9H3S7 1636 aa22.94■■□□□ 1.26
COPS3-201ENST00000268717 PREX2Q70Z35 1606 aa22.93■■□□□ 1.26
COPS3-201ENST00000268717 ADGRL1O94910 1474 aa22.92■■□□□ 1.26
COPS3-201ENST00000268717 ARHGAP5Q13017 1502 aa22.92■■□□□ 1.26
COPS3-201ENST00000268717 EFCAB2Q5VUJ9 269 aa22.92■■□□□ 1.26
COPS3-201ENST00000268717 CDC42BPAQ5VT25 1732 aa22.91■■□□□ 1.26
COPS3-201ENST00000268717 AEBP2Q6ZN18 517 aaPredicted RBP22.9■■□□□ 1.26
COPS3-201ENST00000268717 KDM4FA0A1W2PPD8 638 aa22.89■■□□□ 1.25
COPS3-201ENST00000268717 SCAPERQ9BY12 1400 aa22.88■■□□□ 1.25
COPS3-201ENST00000268717 ITGAEP38570 1179 aa22.86■■□□□ 1.25
COPS3-201ENST00000268717 ZMYM4Q5VZL5 1548 aa22.86■■□□□ 1.25
COPS3-201ENST00000268717 POGZQ7Z3K3 1410 aa22.86■■□□□ 1.25
COPS3-201ENST00000268717 SETD5Q9C0A6 1442 aa22.86■■□□□ 1.25
COPS3-201ENST00000268717 CLSPNQ9HAW4 1339 aa22.85■■□□□ 1.25
COPS3-201ENST00000268717 ITSN2Q9NZM3 1697 aa22.85■■□□□ 1.25
COPS3-201ENST00000268717 ARHGEF40Q8TER5 1519 aa22.84■■□□□ 1.25
COPS3-201ENST00000268717 GPATCH8Q9UKJ3 1502 aaKnown RBP22.83■■□□□ 1.25
COPS3-201ENST00000268717 RAB3GAP2Q9H2M9 1393 aa22.81■■□□□ 1.24
COPS3-201ENST00000268717 HFM1A2PYH4 1435 aa22.8■■□□□ 1.24
COPS3-201ENST00000268717 ABCC1P33527 1531 aa22.8■■□□□ 1.24
COPS3-201ENST00000268717 MAGI2Q86UL8 1455 aa22.8■■□□□ 1.24
COPS3-201ENST00000268717 PTPRKQ15262 1439 aa22.79■■□□□ 1.24
COPS3-201ENST00000268717 DHX57Q6P158 1386 aaKnown RBP22.79■■□□□ 1.24
COPS3-201ENST00000268717 ZNF518AQ6AHZ1 1483 aa22.78■■□□□ 1.24
COPS3-201ENST00000268717 ZFYVE16Q7Z3T8 1539 aa22.78■■□□□ 1.24
COPS3-201ENST00000268717 KDM5CP41229 1560 aa22.76■■□□□ 1.23
COPS3-201ENST00000268717 SAMD9LQ8IVG5 1584 aa22.76■■□□□ 1.23
COPS3-201ENST00000268717 ARHGEF12Q9NZN5 1544 aa22.76■■□□□ 1.23
COPS3-201ENST00000268717 YEATS2Q9ULM3 1422 aa22.75■■□□□ 1.23
COPS3-201ENST00000268717 CFDP1Q9UEE9 299 aaPredicted RBP22.73■■□□□ 1.23
COPS3-201ENST00000268717 DNMT1P26358 1616 aaKnown RBP22.72■■□□□ 1.23
COPS3-201ENST00000268717 AFAP1Q8N556 730 aa22.72■■□□□ 1.23
COPS3-201ENST00000268717 CAMSAP2Q08AD1 1489 aa22.72■■□□□ 1.23
COPS3-201ENST00000268717 ZNF777Q9ULD5 760 aaPredicted RBP22.71■■□□□ 1.23
COPS3-201ENST00000268717 DAPK1P53355 1430 aa22.71■■□□□ 1.23
COPS3-201ENST00000268717 TRAPPC8Q9Y2L5 1435 aa22.71■■□□□ 1.23
COPS3-201ENST00000268717 HECW2Q9P2P5 1572 aa22.71■■□□□ 1.23
COPS3-201ENST00000268717 ROCK1Q13464 1354 aa22.71■■□□□ 1.23
COPS3-201ENST00000268717 NAIPQ13075 1403 aa22.7■■□□□ 1.23
COPS3-201ENST00000268717 BCORL1Q5H9F3 1711 aa22.69■■□□□ 1.22
COPS3-201ENST00000268717 SYCP2Q9BX26 1530 aa22.69■■□□□ 1.22
COPS3-201ENST00000268717 SIGLEC1Q9BZZ2 1709 aa22.69■■□□□ 1.22
COPS3-201ENST00000268717 ADAMTSL3P82987 1691 aa22.68■■□□□ 1.22
COPS3-201ENST00000268717 ABCC5O15440 1437 aa22.68■■□□□ 1.22
COPS3-201ENST00000268717 PLEKHH2Q8IVE3 1493 aa22.67■■□□□ 1.22
COPS3-201ENST00000268717 MLH3Q9UHC1 1453 aa22.67■■□□□ 1.22
COPS3-201ENST00000268717 ARID4BQ4LE39 1312 aaPredicted RBP22.67■■□□□ 1.22
COPS3-201ENST00000268717 KIAA1107Q9UPP5 1409 aa22.66■■□□□ 1.22
COPS3-201ENST00000268717 ATP10AO60312 1499 aa22.66■■□□□ 1.22
COPS3-201ENST00000268717 ACIN1Q9UKV3 1341 aaKnown RBP22.66■■□□□ 1.22
COPS3-201ENST00000268717 ZNF644Q9H582 1327 aaPredicted RBP22.65■■□□□ 1.22
COPS3-201ENST00000268717 GCC2Q8IWJ2 1684 aa22.65■■□□□ 1.22
COPS3-201ENST00000268717 DIP2CQ9Y2E4 1556 aa22.64■■□□□ 1.21
COPS3-201ENST00000268717 KIDINS220Q9ULH0 1771 aa22.63■■□□□ 1.21
COPS3-201ENST00000268717 C9orf84Q5VXU9 1444 aa22.63■■□□□ 1.21
COPS3-201ENST00000268717 HNRNPMP52272 730 aaKnown RBP eCLIP22.63■■□□□ 1.21
COPS3-201ENST00000268717 ABCA6Q8N139 1617 aa22.62■■□□□ 1.21
COPS3-201ENST00000268717 SHANK2Q9UPX8 1470 aa22.61■■□□□ 1.21
COPS3-201ENST00000268717 MYT1LQ9UL68 1186 aa22.6■■□□□ 1.21
COPS3-201ENST00000268717 ADGRL2O95490 1459 aa22.6■■□□□ 1.21
COPS3-201ENST00000268717 MADDQ8WXG6 1647 aa22.59■■□□□ 1.21
COPS3-201ENST00000268717 ARHGEF5Q12774 1597 aa22.59■■□□□ 1.21
COPS3-201ENST00000268717 REREQ9P2R6 1566 aa22.59■■□□□ 1.21
COPS3-201ENST00000268717 CROCC2H7BZ55 1655 aa22.58■■□□□ 1.2
COPS3-201ENST00000268717 MBD5Q9P267 1494 aa22.57■■□□□ 1.2
COPS3-201ENST00000268717 INO80Q9ULG1 1556 aaPredicted RBP22.55■■□□□ 1.2
COPS3-201ENST00000268717 SPAG9O60271 1321 aaKnown RBP22.55■■□□□ 1.2
COPS3-201ENST00000268717 RSPH4AQ5TD94 716 aa22.55■■□□□ 1.2
COPS3-201ENST00000268717 ATP7AQ04656 1500 aa22.55■■□□□ 1.2
COPS3-201ENST00000268717 CHIC2Q9UKJ5 165 aa22.54■■□□□ 1.2
COPS3-201ENST00000268717 PTPRMP28827 1452 aa22.54■■□□□ 1.2
COPS3-201ENST00000268717 ADGBQ8N7X0 1667 aa22.53■■□□□ 1.2
COPS3-201ENST00000268717 RIMS1Q86UR5 1692 aaKnown RBP22.53■■□□□ 1.2
COPS3-201ENST00000268717 NCOA1Q15788 1441 aa22.52■■□□□ 1.2
COPS3-201ENST00000268717 FER1L4A9Z1Z3 1794 aa22.52■■□□□ 1.19
COPS3-201ENST00000268717 RRP7BPQ9NSQ0 103 aa22.51■■□□□ 1.19
COPS3-201ENST00000268717 MLECQ14165 292 aa22.5■■□□□ 1.19
COPS3-201ENST00000268717 AGLP35573 1532 aa22.5■■□□□ 1.19
COPS3-201ENST00000268717 CCDC141Q6ZP82 1450 aa22.5■■□□□ 1.19
COPS3-201ENST00000268717 ANKRD30AQ9BXX3 1397 aa22.5■■□□□ 1.19
COPS3-201ENST00000268717 RTEL1-TNFRSF6BF6WH68 1400 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms