RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 ZMYM4Q5VZL5 1548 aa25.81■■□□□ 1.72
USE1-201ENST00000263897 ARID4BQ4LE39 1312 aaPredicted RBP25.81■■□□□ 1.72
USE1-201ENST00000263897 POGZQ7Z3K3 1410 aa25.8■■□□□ 1.72
USE1-201ENST00000263897 MAGI2Q86UL8 1455 aa25.79■■□□□ 1.72
USE1-201ENST00000263897 ARHGEF40Q8TER5 1519 aa25.78■■□□□ 1.72
USE1-201ENST00000263897 CDC42BPBQ9Y5S2 1711 aa25.77■■□□□ 1.72
USE1-201ENST00000263897 YEATS2Q9ULM3 1422 aa25.76■■□□□ 1.71
USE1-201ENST00000263897 ZFYVE16Q7Z3T8 1539 aa25.74■■□□□ 1.71
USE1-201ENST00000263897 AFAP1Q8N556 730 aa25.74■■□□□ 1.71
USE1-201ENST00000263897 ADAMTSL3P82987 1691 aa25.74■■□□□ 1.71
USE1-201ENST00000263897 PREX2Q70Z35 1606 aa25.72■■□□□ 1.71
USE1-201ENST00000263897 BCORL1Q5H9F3 1711 aa25.71■■□□□ 1.71
USE1-201ENST00000263897 ZNF518AQ6AHZ1 1483 aa25.7■■□□□ 1.7
USE1-201ENST00000263897 MTUS2Q5JR59 1369 aa25.69■■□□□ 1.7
USE1-201ENST00000263897 CDC42BPAQ5VT25 1732 aa25.68■■□□□ 1.7
USE1-201ENST00000263897 GPATCH8Q9UKJ3 1502 aaKnown RBP25.67■■□□□ 1.7
USE1-201ENST00000263897 ATP10AO60312 1499 aa25.66■■□□□ 1.7
USE1-201ENST00000263897 PTPRMP28827 1452 aa25.66■■□□□ 1.7
USE1-201ENST00000263897 ZNF777Q9ULD5 760 aaPredicted RBP25.65■■□□□ 1.7
USE1-201ENST00000263897 ARHGEF12Q9NZN5 1544 aa25.64■■□□□ 1.7
USE1-201ENST00000263897 MYT1LQ9UL68 1186 aa25.64■■□□□ 1.7
USE1-201ENST00000263897 KDM5CP41229 1560 aa25.64■■□□□ 1.69
USE1-201ENST00000263897 SIGLEC1Q9BZZ2 1709 aa25.63■■□□□ 1.69
USE1-201ENST00000263897 ABCC1P33527 1531 aa25.63■■□□□ 1.69
USE1-201ENST00000263897 TRAPPC8Q9Y2L5 1435 aa25.63■■□□□ 1.69
USE1-201ENST00000263897 CCNB3Q8WWL7 1395 aa25.62■■□□□ 1.69
USE1-201ENST00000263897 CFDP1Q9UEE9 299 aaPredicted RBP25.62■■□□□ 1.69
USE1-201ENST00000263897 MADDQ8WXG6 1647 aa25.61■■□□□ 1.69
USE1-201ENST00000263897 C9orf84Q5VXU9 1444 aa25.6■■□□□ 1.69
USE1-201ENST00000263897 MLH3Q9UHC1 1453 aa25.6■■□□□ 1.69
USE1-201ENST00000263897 MLECQ14165 292 aa25.59■■□□□ 1.69
USE1-201ENST00000263897 ITSN2Q9NZM3 1697 aa25.58■■□□□ 1.68
USE1-201ENST00000263897 HNRNPMP52272 730 aaKnown RBP eCLIP25.57■■□□□ 1.68
USE1-201ENST00000263897 HECW2Q9P2P5 1572 aa25.56■■□□□ 1.68
USE1-201ENST00000263897 EHBP1L1Q8N3D4 1523 aa25.56■■□□□ 1.68
USE1-201ENST00000263897 SAMD9LQ8IVG5 1584 aa25.56■■□□□ 1.68
USE1-201ENST00000263897 VPS8Q8N3P4 1428 aa25.55■■□□□ 1.68
USE1-201ENST00000263897 RIMS1Q86UR5 1692 aaKnown RBP25.53■■□□□ 1.68
USE1-201ENST00000263897 KIAA1107Q9UPP5 1409 aa25.53■■□□□ 1.68
USE1-201ENST00000263897 DIP2CQ9Y2E4 1556 aa25.52■■□□□ 1.68
USE1-201ENST00000263897 PLEKHH2Q8IVE3 1493 aa25.51■■□□□ 1.67
USE1-201ENST00000263897 SYCP2Q9BX26 1530 aa25.49■■□□□ 1.67
USE1-201ENST00000263897 TIAM1Q13009 1591 aa25.48■■□□□ 1.67
USE1-201ENST00000263897 SPAG9O60271 1321 aaKnown RBP25.48■■□□□ 1.67
USE1-201ENST00000263897 ZNF644Q9H582 1327 aaPredicted RBP25.48■■□□□ 1.67
USE1-201ENST00000263897 KIDINS220Q9ULH0 1771 aa25.48■■□□□ 1.67
USE1-201ENST00000263897 ABCA6Q8N139 1617 aa25.48■■□□□ 1.67
USE1-201ENST00000263897 REREQ9P2R6 1566 aa25.47■■□□□ 1.67
USE1-201ENST00000263897 PLPPR3Q6T4P5 718 aa25.45■■□□□ 1.66
USE1-201ENST00000263897 NCOA2Q15596 1464 aa25.45■■□□□ 1.66
USE1-201ENST00000263897 FER1L4A9Z1Z3 1794 aa25.44■■□□□ 1.66
USE1-201ENST00000263897 SUPT6HQ7KZ85 1726 aaKnown RBP25.43■■□□□ 1.66
USE1-201ENST00000263897 AGLP35573 1532 aa25.42■■□□□ 1.66
USE1-201ENST00000263897 LRRC9Q6ZRR7 1453 aa25.4■■□□□ 1.66
USE1-201ENST00000263897 MAP3K1Q13233 1512 aa25.4■■□□□ 1.66
USE1-201ENST00000263897 KANK4Q5T7N3 995 aaPredicted RBP25.39■■□□□ 1.66
USE1-201ENST00000263897 MBD5Q9P267 1494 aa25.39■■□□□ 1.65
USE1-201ENST00000263897 CEBPAP49715 358 aaPredicted RBP25.37■■□□□ 1.65
USE1-201ENST00000263897 ATP7AQ04656 1500 aa25.37■■□□□ 1.65
USE1-201ENST00000263897 LMTK3Q96Q04 1460 aa25.34■■□□□ 1.65
USE1-201ENST00000263897 RSPH4AQ5TD94 716 aa25.33■■□□□ 1.65
USE1-201ENST00000263897 ESF1Q9H501 851 aaKnown RBP25.33■■□□□ 1.65
USE1-201ENST00000263897 INO80Q9ULG1 1556 aaPredicted RBP25.33■■□□□ 1.65
USE1-201ENST00000263897 APLP2Q06481 763 aa25.31■■□□□ 1.64
USE1-201ENST00000263897 RTEL1-TNFRSF6BF6WH68 1400 aa25.29■■□□□ 1.64
USE1-201ENST00000263897 A2MP01023 1474 aa25.29■■□□□ 1.64
USE1-201ENST00000263897 CAMSAP2Q08AD1 1489 aa25.29■■□□□ 1.64
USE1-201ENST00000263897 HSPA2P54652 639 aa25.27■■□□□ 1.64
USE1-201ENST00000263897 SETD1BQ9UPS6 1966 aaKnown RBP25.26■■□□□ 1.63
USE1-201ENST00000263897 CCDC141Q6ZP82 1450 aa25.25■■□□□ 1.63
USE1-201ENST00000263897 PLXNC1O60486 1568 aa25.24■■□□□ 1.63
USE1-201ENST00000263897 CNTLNQ9NXG0 1405 aa25.24■■□□□ 1.63
USE1-201ENST00000263897 ADGBQ8N7X0 1667 aa25.23■■□□□ 1.63
USE1-201ENST00000263897 TSPY4P0CV99 314 aa25.22■■□□□ 1.63
USE1-201ENST00000263897 TSPY10P0CW01 314 aa25.22■■□□□ 1.63
USE1-201ENST00000263897 MYOM3Q5VTT5 1437 aa25.21■■□□□ 1.63
USE1-201ENST00000263897 DHX29Q7Z478 1369 aaKnown RBP25.21■■□□□ 1.63
USE1-201ENST00000263897 GGT6Q6P531 493 aa25.21■■□□□ 1.63
USE1-201ENST00000263897 MIA2Q96PC5 1412 aa25.2■■□□□ 1.63
USE1-201ENST00000263897 C3P01024 1663 aa25.2■■□□□ 1.63
USE1-201ENST00000263897 ARHGEF5Q12774 1597 aa25.2■■□□□ 1.62
USE1-201ENST00000263897 PPP6R1Q9UPN7 881 aa25.19■■□□□ 1.62
USE1-201ENST00000263897 PREX1Q8TCU6 1659 aa25.18■■□□□ 1.62
USE1-201ENST00000263897 ZMYM3Q14202 1370 aa25.18■■□□□ 1.62
USE1-201ENST00000263897 UHRF1BP1Q6BDS2 1440 aa25.13■■□□□ 1.61
USE1-201ENST00000263897 KIF3BO15066 747 aa25.13■■□□□ 1.61
USE1-201ENST00000263897 MROH2AA6NES4 1674 aa25.13■■□□□ 1.61
USE1-201ENST00000263897 CLTCQ00610 1675 aaKnown RBP25.1■■□□□ 1.61
USE1-201ENST00000263897 ILDR1Q86SU0 546 aaPredicted RBP25.08■■□□□ 1.61
USE1-201ENST00000263897 NPATQ14207 1427 aa25.08■■□□□ 1.61
USE1-201ENST00000263897 MAST1Q9Y2H9 1570 aa25.06■■□□□ 1.6
USE1-201ENST00000263897 PTPN23Q9H3S7 1636 aa25.02■■□□□ 1.6
USE1-201ENST00000263897 PTPRKQ15262 1439 aa25.02■■□□□ 1.6
USE1-201ENST00000263897 FGD6Q6ZV73 1430 aa25.02■■□□□ 1.6
USE1-201ENST00000263897 DMRT2Q9Y5R5 561 aa25.01■■□□□ 1.59
USE1-201ENST00000263897 WASHC2CQ9Y4E1 1318 aa25■■□□□ 1.59
USE1-201ENST00000263897 ABCC5O15440 1437 aa25■■□□□ 1.59
USE1-201ENST00000263897 STRCQ7RTU9 1775 aa24.98■■□□□ 1.59
USE1-201ENST00000263897 TCOF1Q13428 1488 aaKnown RBP24.97■■□□□ 1.59
USE1-201ENST00000263897 FAM135AQ9P2D6 1515 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms