RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DHX57Q6P158 1386 aaKnown RBP16.15■□□□□ 0.18
VPS4A-201ENST00000254950 TRHP20396 242 aaPredicted RBP16.15■□□□□ 0.18
VPS4A-201ENST00000254950 RGL3Q3MIN7 710 aa16.15■□□□□ 0.18
VPS4A-201ENST00000254950 SUPT6HQ7KZ85 1726 aaKnown RBP16.14■□□□□ 0.17
VPS4A-201ENST00000254950 BCANQ96GW7 911 aa16.13■□□□□ 0.17
VPS4A-201ENST00000254950 PELP1Q8IZL8 1130 aaKnown RBP16.13■□□□□ 0.17
VPS4A-201ENST00000254950 EIF4G2P78344 907 aaKnown RBP eCLIP16.12■□□□□ 0.17
VPS4A-201ENST00000254950 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.11■□□□□ 0.17
VPS4A-201ENST00000254950 ARID4BQ4LE39 1312 aaPredicted RBP16.11■□□□□ 0.17
VPS4A-201ENST00000254950 FOXD1Q16676 465 aa16.11■□□□□ 0.17
VPS4A-201ENST00000254950 KIAA0556O60303 1618 aa16.09■□□□□ 0.17
VPS4A-201ENST00000254950 DDX10Q13206 875 aaKnown RBP16.09■□□□□ 0.17
VPS4A-201ENST00000254950 KIF3BO15066 747 aa16.09■□□□□ 0.17
VPS4A-201ENST00000254950 GGT6Q6P531 493 aa16.09■□□□□ 0.17
VPS4A-201ENST00000254950 PLPPR3Q6T4P5 718 aa16.08■□□□□ 0.17
VPS4A-201ENST00000254950 ARHGAP5Q13017 1502 aa16.07■□□□□ 0.16
VPS4A-201ENST00000254950 HIRIP3Q9BW71 556 aaPredicted RBP16.06■□□□□ 0.16
VPS4A-201ENST00000254950 FAM69CQ0P6D2 419 aa16.05■□□□□ 0.16
VPS4A-201ENST00000254950 RAPGEF6Q8TEU7 1601 aa16.05■□□□□ 0.16
VPS4A-201ENST00000254950 DISP1Q96F81 1524 aa16.05■□□□□ 0.16
VPS4A-201ENST00000254950 KIF15Q9NS87 1388 aa16.04■□□□□ 0.16
VPS4A-201ENST00000254950 NUP153P49790 1475 aaKnown RBP16.04■□□□□ 0.16
VPS4A-201ENST00000254950 NEFLP07196 543 aa16.04■□□□□ 0.16
VPS4A-201ENST00000254950 PLEKHH2Q8IVE3 1493 aa16.02■□□□□ 0.16
VPS4A-201ENST00000254950 CEP170Q5SW79 1584 aa16.02■□□□□ 0.15
VPS4A-201ENST00000254950 SAMD9Q5K651 1589 aa16.01■□□□□ 0.15
VPS4A-201ENST00000254950 ANKRD50Q9ULJ7 1429 aa16■□□□□ 0.15
VPS4A-201ENST00000254950 ATP10BO94823 1461 aa16■□□□□ 0.15
VPS4A-201ENST00000254950 DCAF11Q8TEB1 546 aa16■□□□□ 0.15
VPS4A-201ENST00000254950 ARHGEF11O15085 1522 aa16■□□□□ 0.15
VPS4A-201ENST00000254950 MLECQ14165 292 aa15.99■□□□□ 0.15
VPS4A-201ENST00000254950 CARD11Q9BXL7 1154 aa15.99■□□□□ 0.15
VPS4A-201ENST00000254950 HFM1A2PYH4 1435 aa15.99■□□□□ 0.15
VPS4A-201ENST00000254950 PPP1R15AO75807 674 aaPredicted RBP15.99■□□□□ 0.15
VPS4A-201ENST00000254950 AFAP1Q8N556 730 aa15.99■□□□□ 0.15
VPS4A-201ENST00000254950 KIF14Q15058 1648 aa15.98■□□□□ 0.15
VPS4A-201ENST00000254950 DAPK1P53355 1430 aa15.98■□□□□ 0.15
VPS4A-201ENST00000254950 C9orf84Q5VXU9 1444 aa15.97■□□□□ 0.15
VPS4A-201ENST00000254950 PTPN23Q9H3S7 1636 aa15.95■□□□□ 0.14
VPS4A-201ENST00000254950 L3MBTL2Q969R5 705 aa15.95■□□□□ 0.14
VPS4A-201ENST00000254950 WASHC2CQ9Y4E1 1318 aa15.94■□□□□ 0.14
VPS4A-201ENST00000254950 CFAP43Q8NDM7 1665 aa15.93■□□□□ 0.14
VPS4A-201ENST00000254950 CAMSAP2Q08AD1 1489 aa15.92■□□□□ 0.14
VPS4A-201ENST00000254950 ROCK1Q13464 1354 aa15.92■□□□□ 0.14
VPS4A-201ENST00000254950 NAIPQ13075 1403 aa15.92■□□□□ 0.14
VPS4A-201ENST00000254950 GPATCH8Q9UKJ3 1502 aaKnown RBP15.91■□□□□ 0.14
VPS4A-201ENST00000254950 ABCC5O15440 1437 aa15.9■□□□□ 0.14
VPS4A-201ENST00000254950 SCAPERQ9BY12 1400 aa15.89■□□□□ 0.13
VPS4A-201ENST00000254950 CCDC141Q6ZP82 1450 aa15.88■□□□□ 0.13
VPS4A-201ENST00000254950 CCDC144AA2RUR9 1427 aa15.88■□□□□ 0.13
VPS4A-201ENST00000254950 MIER1Q8N108 512 aa15.88■□□□□ 0.13
VPS4A-201ENST00000254950 CD109Q6YHK3 1445 aa15.87■□□□□ 0.13
VPS4A-201ENST00000254950 SENP3Q9H4L4 574 aaPredicted RBP15.87■□□□□ 0.13
VPS4A-201ENST00000254950 ABCC2Q92887 1545 aa15.86■□□□□ 0.13
VPS4A-201ENST00000254950 CDCA8Q53HL2 280 aa15.85■□□□□ 0.13
VPS4A-201ENST00000254950 HSPA5P11021 654 aaKnown RBP15.84■□□□□ 0.13
VPS4A-201ENST00000254950 AKNAQ7Z591 1439 aa15.84■□□□□ 0.13
VPS4A-201ENST00000254950 CHD1O14646 1710 aa15.83■□□□□ 0.12
VPS4A-201ENST00000254950 ASXL2Q76L83 1435 aa15.82■□□□□ 0.12
VPS4A-201ENST00000254950 NCOA1Q15788 1441 aa15.81■□□□□ 0.12
VPS4A-201ENST00000254950 RAPGEF3O95398 923 aa15.8■□□□□ 0.12
VPS4A-201ENST00000254950 HDGFP51858 240 aaKnown RBP15.8■□□□□ 0.12
VPS4A-201ENST00000254950 WDR7Q9Y4E6 1490 aa15.8■□□□□ 0.12
VPS4A-201ENST00000254950 PLCH2O75038 1416 aa15.8■□□□□ 0.12
VPS4A-201ENST00000254950 SLC24A1O60721 1099 aa15.79■□□□□ 0.12
VPS4A-201ENST00000254950 ADGRL1O94910 1474 aa15.79■□□□□ 0.12
VPS4A-201ENST00000254950 ROCK2O75116 1388 aaKnown RBP15.79■□□□□ 0.12
VPS4A-201ENST00000254950 ITSN2Q9NZM3 1697 aa15.78■□□□□ 0.12
VPS4A-201ENST00000254950 FANCAO15360 1455 aa15.78■□□□□ 0.12
VPS4A-201ENST00000254950 TCOF1Q13428 1488 aaKnown RBP15.78■□□□□ 0.12
VPS4A-201ENST00000254950 PTPRKQ15262 1439 aa15.77■□□□□ 0.11
VPS4A-201ENST00000254950 KIAA1107Q9UPP5 1409 aa15.77■□□□□ 0.11
VPS4A-201ENST00000254950 TMF1P82094 1093 aa15.76■□□□□ 0.11
VPS4A-201ENST00000254950 TMC1Q8TDI8 760 aa15.76■□□□□ 0.11
VPS4A-201ENST00000254950 ABCA8O94911 1581 aa15.75■□□□□ 0.11
VPS4A-201ENST00000254950 MRS2Q9HD23 443 aa15.75■□□□□ 0.11
VPS4A-201ENST00000254950 POGKQ9P215 609 aa15.74■□□□□ 0.11
VPS4A-201ENST00000254950 MAGI3Q5TCQ9 1506 aa15.73■□□□□ 0.11
VPS4A-201ENST00000254950 FAM9BQ8IZU0 186 aa15.73■□□□□ 0.11
VPS4A-201ENST00000254950 HNRNPUQ00839 825 aaKnown RBP eCLIP15.7■□□□□ 0.1
VPS4A-201ENST00000254950 UHRF1BP1LA0JNW5 1464 aa15.69■□□□□ 0.1
VPS4A-201ENST00000254950 STAC3Q96MF2 364 aa15.69■□□□□ 0.1
VPS4A-201ENST00000254950 KNSTRNQ9Y448 316 aa15.69■□□□□ 0.1
VPS4A-201ENST00000254950 DENND4BO75064 1496 aaPredicted RBP15.68■□□□□ 0.1
VPS4A-201ENST00000254950 SYCP2Q9BX26 1530 aa15.67■□□□□ 0.1
VPS4A-201ENST00000254950 NEFMP07197 916 aa15.67■□□□□ 0.1
VPS4A-201ENST00000254950 VGFO15240 615 aaPredicted RBP15.66■□□□□ 0.1
VPS4A-201ENST00000254950 EIF3AQ14152 1382 aaKnown RBP15.65■□□□□ 0.1
VPS4A-201ENST00000254950 KDM5BQ9UGL1 1544 aa15.65■□□□□ 0.1
VPS4A-201ENST00000254950 STK26Q9P289 416 aa15.65■□□□□ 0.1
VPS4A-201ENST00000254950 NUTM2DQ5VT03 806 aaPredicted RBP15.64■□□□□ 0.09
VPS4A-201ENST00000254950 ERCC6L2Q5T890 1561 aa15.64■□□□□ 0.09
VPS4A-201ENST00000254950 ANKRD30BQ9BXX2 1392 aa15.64■□□□□ 0.09
VPS4A-201ENST00000254950 ST20-MTHFSA0A0A6YYL1 179 aa15.63■□□□□ 0.09
VPS4A-201ENST00000254950 USP47Q96K76 1375 aa15.63■□□□□ 0.09
VPS4A-201ENST00000254950 TRAPPC8Q9Y2L5 1435 aa15.63■□□□□ 0.09
VPS4A-201ENST00000254950 SHANK2Q9UPX8 1470 aa15.62■□□□□ 0.09
VPS4A-201ENST00000254950 DHX29Q7Z478 1369 aaKnown RBP15.62■□□□□ 0.09
VPS4A-201ENST00000254950 SAFB2Q14151 953 aaKnown RBP eCLIP15.61■□□□□ 0.09
VPS4A-201ENST00000254950 WDR43Q15061 677 aaKnown RBP eCLIP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms