RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 CASKIN1Q8WXD9 1431 aa34.27■■■■□ 3.08
NEDD8-201ENST00000250495 ZFYVE16Q7Z3T8 1539 aa34.26■■■■□ 3.08
NEDD8-201ENST00000250495 POGZQ7Z3K3 1410 aa34.26■■■■□ 3.07
NEDD8-201ENST00000250495 LRRIQ1Q96JM4 1722 aa34.24■■■■□ 3.07
NEDD8-201ENST00000250495 YEATS2Q9ULM3 1422 aa34.24■■■■□ 3.07
NEDD8-201ENST00000250495 MADDQ8WXG6 1647 aa34.22■■■■□ 3.07
NEDD8-201ENST00000250495 CCDC18Q5T9S5 1454 aa34.21■■■■□ 3.07
NEDD8-201ENST00000250495 ARHGAP5Q13017 1502 aa34.18■■■■□ 3.06
NEDD8-201ENST00000250495 PCF11O94913 1555 aaKnown RBP34.17■■■■□ 3.06
NEDD8-201ENST00000250495 ATP10AO60312 1499 aa34.13■■■■□ 3.05
NEDD8-201ENST00000250495 ZNF518AQ6AHZ1 1483 aa34.11■■■■□ 3.05
NEDD8-201ENST00000250495 RIMS1Q86UR5 1692 aaKnown RBP34.11■■■■□ 3.05
NEDD8-201ENST00000250495 FYCO1Q9BQS8 1478 aa34.1■■■■□ 3.05
NEDD8-201ENST00000250495 MLECQ14165 292 aa34.1■■■■□ 3.05
NEDD8-201ENST00000250495 AFAP1Q8N556 730 aa34.1■■■■□ 3.05
NEDD8-201ENST00000250495 ILDR1Q86SU0 546 aaPredicted RBP34.08■■■■□ 3.05
NEDD8-201ENST00000250495 MYT1LQ9UL68 1186 aa34.07■■■■□ 3.04
NEDD8-201ENST00000250495 SIGLEC1Q9BZZ2 1709 aa34.06■■■■□ 3.04
NEDD8-201ENST00000250495 CDC42BPBQ9Y5S2 1711 aa34.06■■■■□ 3.04
NEDD8-201ENST00000250495 C9orf84Q5VXU9 1444 aa34.05■■■■□ 3.04
NEDD8-201ENST00000250495 PLPPR3Q6T4P5 718 aa34.01■■■■□ 3.03
NEDD8-201ENST00000250495 KDM5CP41229 1560 aa34.01■■■■□ 3.03
NEDD8-201ENST00000250495 PREX2Q70Z35 1606 aa34.01■■■■□ 3.03
NEDD8-201ENST00000250495 LMTK3Q96Q04 1460 aa33.95■■■■□ 3.03
NEDD8-201ENST00000250495 FER1L4A9Z1Z3 1794 aa33.95■■■■□ 3.02
NEDD8-201ENST00000250495 MLH3Q9UHC1 1453 aa33.94■■■■□ 3.02
NEDD8-201ENST00000250495 ARHGEF12Q9NZN5 1544 aa33.93■■■■□ 3.02
NEDD8-201ENST00000250495 TRAPPC8Q9Y2L5 1435 aa33.92■■■■□ 3.02
NEDD8-201ENST00000250495 ABCC1P33527 1531 aa33.92■■■■□ 3.02
NEDD8-201ENST00000250495 CDC42BPAQ5VT25 1732 aa33.92■■■■□ 3.02
NEDD8-201ENST00000250495 ZNF777Q9ULD5 760 aaPredicted RBP33.89■■■■□ 3.02
NEDD8-201ENST00000250495 DIP2CQ9Y2E4 1556 aa33.87■■■■□ 3.01
NEDD8-201ENST00000250495 ITSN2Q9NZM3 1697 aa33.87■■■■□ 3.01
NEDD8-201ENST00000250495 GPATCH8Q9UKJ3 1502 aaKnown RBP33.86■■■■□ 3.01
NEDD8-201ENST00000250495 REREQ9P2R6 1566 aa33.85■■■■□ 3.01
NEDD8-201ENST00000250495 MTUS2Q5JR59 1369 aa33.83■■■■□ 3.01
NEDD8-201ENST00000250495 HSPA2P54652 639 aa33.82■■■■□ 3
NEDD8-201ENST00000250495 CFDP1Q9UEE9 299 aaPredicted RBP33.81■■■■□ 3
NEDD8-201ENST00000250495 ABCA6Q8N139 1617 aa33.81■■■■□ 3
NEDD8-201ENST00000250495 CCNB3Q8WWL7 1395 aa33.8■■■■□ 3
NEDD8-201ENST00000250495 CEBPAP49715 358 aaPredicted RBP33.79■■■■□ 3
NEDD8-201ENST00000250495 HNRNPMP52272 730 aaKnown RBP eCLIP33.77■■■■□ 3
NEDD8-201ENST00000250495 SAMD9LQ8IVG5 1584 aa33.77■■■■□ 3
NEDD8-201ENST00000250495 AGLP35573 1532 aa33.76■■■■□ 3
NEDD8-201ENST00000250495 CEP162Q5TB80 1403 aa33.76■■■□□ 2.99
NEDD8-201ENST00000250495 KIDINS220Q9ULH0 1771 aa33.75■■■□□ 2.99
NEDD8-201ENST00000250495 ESF1Q9H501 851 aaKnown RBP33.75■■■□□ 2.99
NEDD8-201ENST00000250495 SPAG9O60271 1321 aaKnown RBP33.74■■■□□ 2.99
NEDD8-201ENST00000250495 KIAA1107Q9UPP5 1409 aa33.73■■■□□ 2.99
NEDD8-201ENST00000250495 PLEKHH2Q8IVE3 1493 aa33.73■■■□□ 2.99
NEDD8-201ENST00000250495 SYCP2Q9BX26 1530 aa33.72■■■□□ 2.99
NEDD8-201ENST00000250495 SETD1BQ9UPS6 1966 aaKnown RBP33.69■■■□□ 2.98
NEDD8-201ENST00000250495 FBXO41Q8TF61 875 aa33.67■■■□□ 2.98
NEDD8-201ENST00000250495 PREX1Q8TCU6 1659 aa33.66■■■□□ 2.98
NEDD8-201ENST00000250495 EHBP1L1Q8N3D4 1523 aa33.64■■■□□ 2.98
NEDD8-201ENST00000250495 CNTLNQ9NXG0 1405 aa33.6■■■□□ 2.97
NEDD8-201ENST00000250495 UHRF1BP1Q6BDS2 1440 aa33.59■■■□□ 2.97
NEDD8-201ENST00000250495 ATP7AQ04656 1500 aa33.58■■■□□ 2.97
NEDD8-201ENST00000250495 TIAM1Q13009 1591 aa33.57■■■□□ 2.96
NEDD8-201ENST00000250495 ZNF644Q9H582 1327 aaPredicted RBP33.56■■■□□ 2.96
NEDD8-201ENST00000250495 C3P01024 1663 aa33.56■■■□□ 2.96
NEDD8-201ENST00000250495 LOC105371045A0A1W2PR82 267 aa33.55■■■□□ 2.96
NEDD8-201ENST00000250495 INO80Q9ULG1 1556 aaPredicted RBP33.52■■■□□ 2.96
NEDD8-201ENST00000250495 A2MP01023 1474 aa33.52■■■□□ 2.96
NEDD8-201ENST00000250495 DMRT2Q9Y5R5 561 aa33.52■■■□□ 2.96
NEDD8-201ENST00000250495 SUPT6HQ7KZ85 1726 aaKnown RBP33.51■■■□□ 2.96
NEDD8-201ENST00000250495 MBD5Q9P267 1494 aa33.49■■■□□ 2.95
NEDD8-201ENST00000250495 NCOA2Q15596 1464 aa33.46■■■□□ 2.95
NEDD8-201ENST00000250495 ZMYM3Q14202 1370 aa33.46■■■□□ 2.95
NEDD8-201ENST00000250495 RSPH4AQ5TD94 716 aa33.45■■■□□ 2.95
NEDD8-201ENST00000250495 PLXNC1O60486 1568 aa33.45■■■□□ 2.95
NEDD8-201ENST00000250495 RTEL1-TNFRSF6BF6WH68 1400 aa33.45■■■□□ 2.94
NEDD8-201ENST00000250495 GGT6Q6P531 493 aa33.44■■■□□ 2.94
NEDD8-201ENST00000250495 VPS8Q8N3P4 1428 aa33.43■■■□□ 2.94
NEDD8-201ENST00000250495 MROH2AA6NES4 1674 aa33.42■■■□□ 2.94
NEDD8-201ENST00000250495 PPP6R1Q9UPN7 881 aa33.42■■■□□ 2.94
NEDD8-201ENST00000250495 ADGBQ8N7X0 1667 aa33.42■■■□□ 2.94
NEDD8-201ENST00000250495 CERKQ8TCT0 537 aa33.41■■■□□ 2.94
NEDD8-201ENST00000250495 NPATQ14207 1427 aa33.4■■■□□ 2.94
NEDD8-201ENST00000250495 STRCQ7RTU9 1775 aa33.39■■■□□ 2.94
NEDD8-201ENST00000250495 DHX29Q7Z478 1369 aaKnown RBP33.35■■■□□ 2.93
NEDD8-201ENST00000250495 CLTCQ00610 1675 aaKnown RBP33.34■■■□□ 2.93
NEDD8-201ENST00000250495 CAMSAP2Q08AD1 1489 aa33.34■■■□□ 2.93
NEDD8-201ENST00000250495 CCDC141Q6ZP82 1450 aa33.34■■■□□ 2.93
NEDD8-201ENST00000250495 LRRC9Q6ZRR7 1453 aa33.33■■■□□ 2.93
NEDD8-201ENST00000250495 PTPRTO14522 1441 aa33.3■■■□□ 2.92
NEDD8-201ENST00000250495 TSPY4P0CV99 314 aa33.3■■■□□ 2.92
NEDD8-201ENST00000250495 TSPY10P0CW01 314 aa33.3■■■□□ 2.92
NEDD8-201ENST00000250495 MAP3K1Q13233 1512 aa33.27■■■□□ 2.92
NEDD8-201ENST00000250495 KIF3BO15066 747 aa33.26■■■□□ 2.91
NEDD8-201ENST00000250495 PTPRKQ15262 1439 aa33.25■■■□□ 2.91
NEDD8-201ENST00000250495 KANK4Q5T7N3 995 aaPredicted RBP33.24■■■□□ 2.91
NEDD8-201ENST00000250495 NCOA1Q15788 1441 aa33.23■■■□□ 2.91
NEDD8-201ENST00000250495 ARHGEF5Q12774 1597 aa33.22■■■□□ 2.91
NEDD8-201ENST00000250495 CAMSAP1Q5T5Y3 1602 aa33.19■■■□□ 2.9
NEDD8-201ENST00000250495 APLP2Q06481 763 aa33.15■■■□□ 2.9
NEDD8-201ENST00000250495 WASHC2CQ9Y4E1 1318 aa33.14■■■□□ 2.9
NEDD8-201ENST00000250495 MYO3AQ8NEV4 1616 aa33.13■■■□□ 2.89
NEDD8-201ENST00000250495 MIA2Q96PC5 1412 aa33.13■■■□□ 2.89
NEDD8-201ENST00000250495 MYOM3Q5VTT5 1437 aa33.11■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms