RNA–Protein interactions for RNA: ENST00000216211.8

UPK3A-201, Transcript of uroplakin 3A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene UPK3A, Length 1,051 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-201ENST00000216211 TROQ12816 1431 aaPredicted RBP24.55■■□□□ 1.52
UPK3A-201ENST00000216211 SCAPERQ9BY12 1400 aa24.54■■□□□ 1.52
UPK3A-201ENST00000216211 RIMS1Q86UR5 1692 aaKnown RBP24.53■■□□□ 1.52
UPK3A-201ENST00000216211 YEATS2Q9ULM3 1422 aa24.52■■□□□ 1.52
UPK3A-201ENST00000216211 CLIP1P30622 1438 aa24.52■■□□□ 1.52
UPK3A-201ENST00000216211 POGZQ7Z3K3 1410 aa24.52■■□□□ 1.52
UPK3A-201ENST00000216211 CASKIN1Q8WXD9 1431 aa24.5■■□□□ 1.51
UPK3A-201ENST00000216211 MAGI2Q86UL8 1455 aa24.5■■□□□ 1.51
UPK3A-201ENST00000216211 EFCAB2Q5VUJ9 269 aa24.49■■□□□ 1.51
UPK3A-201ENST00000216211 CDC42BPBQ9Y5S2 1711 aa24.49■■□□□ 1.51
UPK3A-201ENST00000216211 ARHGAP5Q13017 1502 aa24.48■■□□□ 1.51
UPK3A-201ENST00000216211 CCDC18Q5T9S5 1454 aa24.47■■□□□ 1.51
UPK3A-201ENST00000216211 PREX2Q70Z35 1606 aa24.43■■□□□ 1.5
UPK3A-201ENST00000216211 FER1L4A9Z1Z3 1794 aa24.42■■□□□ 1.5
UPK3A-201ENST00000216211 FYCO1Q9BQS8 1478 aa24.41■■□□□ 1.5
UPK3A-201ENST00000216211 ZNF518AQ6AHZ1 1483 aa24.39■■□□□ 1.5
UPK3A-201ENST00000216211 CDC42BPAQ5VT25 1732 aa24.39■■□□□ 1.5
UPK3A-201ENST00000216211 ATP10AO60312 1499 aa24.38■■□□□ 1.49
UPK3A-201ENST00000216211 KDM5CP41229 1560 aa24.38■■□□□ 1.49
UPK3A-201ENST00000216211 MLECQ14165 292 aa24.38■■□□□ 1.49
UPK3A-201ENST00000216211 C9orf84Q5VXU9 1444 aa24.36■■□□□ 1.49
UPK3A-201ENST00000216211 ILDR1Q86SU0 546 aaPredicted RBP24.36■■□□□ 1.49
UPK3A-201ENST00000216211 ITSN2Q9NZM3 1697 aa24.36■■□□□ 1.49
UPK3A-201ENST00000216211 PLPPR3Q6T4P5 718 aa24.35■■□□□ 1.49
UPK3A-201ENST00000216211 AFAP1Q8N556 730 aa24.35■■□□□ 1.49
UPK3A-201ENST00000216211 ABCC1P33527 1531 aa24.34■■□□□ 1.49
UPK3A-201ENST00000216211 LMTK3Q96Q04 1460 aa24.33■■□□□ 1.49
UPK3A-201ENST00000216211 DIP2CQ9Y2E4 1556 aa24.32■■□□□ 1.48
UPK3A-201ENST00000216211 MYT1LQ9UL68 1186 aa24.31■■□□□ 1.48
UPK3A-201ENST00000216211 ARHGEF12Q9NZN5 1544 aa24.3■■□□□ 1.48
UPK3A-201ENST00000216211 ABCA6Q8N139 1617 aa24.3■■□□□ 1.48
UPK3A-201ENST00000216211 TRAPPC8Q9Y2L5 1435 aa24.27■■□□□ 1.48
UPK3A-201ENST00000216211 MLH3Q9UHC1 1453 aa24.26■■□□□ 1.47
UPK3A-201ENST00000216211 SAMD9LQ8IVG5 1584 aa24.25■■□□□ 1.47
UPK3A-201ENST00000216211 REREQ9P2R6 1566 aa24.24■■□□□ 1.47
UPK3A-201ENST00000216211 KIDINS220Q9ULH0 1771 aa24.24■■□□□ 1.47
UPK3A-201ENST00000216211 GPATCH8Q9UKJ3 1502 aaKnown RBP24.21■■□□□ 1.47
UPK3A-201ENST00000216211 ZNF777Q9ULD5 760 aaPredicted RBP24.21■■□□□ 1.47
UPK3A-201ENST00000216211 SYCP2Q9BX26 1530 aa24.2■■□□□ 1.46
UPK3A-201ENST00000216211 HSPA2P54652 639 aa24.19■■□□□ 1.46
UPK3A-201ENST00000216211 PREX1Q8TCU6 1659 aa24.18■■□□□ 1.46
UPK3A-201ENST00000216211 CEP162Q5TB80 1403 aa24.17■■□□□ 1.46
UPK3A-201ENST00000216211 CEBPAP49715 358 aaPredicted RBP24.16■■□□□ 1.46
UPK3A-201ENST00000216211 MTUS2Q5JR59 1369 aa24.16■■□□□ 1.46
UPK3A-201ENST00000216211 AGLP35573 1532 aa24.15■■□□□ 1.46
UPK3A-201ENST00000216211 CCNB3Q8WWL7 1395 aa24.14■■□□□ 1.45
UPK3A-201ENST00000216211 C3P01024 1663 aa24.13■■□□□ 1.45
UPK3A-201ENST00000216211 HNRNPMP52272 730 aaKnown RBP eCLIP24.12■■□□□ 1.45
UPK3A-201ENST00000216211 EHBP1L1Q8N3D4 1523 aa24.11■■□□□ 1.45
UPK3A-201ENST00000216211 CFDP1Q9UEE9 299 aaPredicted RBP24.11■■□□□ 1.45
UPK3A-201ENST00000216211 TIAM1Q13009 1591 aa24.11■■□□□ 1.45
UPK3A-201ENST00000216211 SUPT6HQ7KZ85 1726 aaKnown RBP24.1■■□□□ 1.45
UPK3A-201ENST00000216211 PLEKHH2Q8IVE3 1493 aa24.08■■□□□ 1.45
UPK3A-201ENST00000216211 SETD1BQ9UPS6 1966 aaKnown RBP24.08■■□□□ 1.45
UPK3A-201ENST00000216211 SPAG9O60271 1321 aaKnown RBP24.08■■□□□ 1.44
UPK3A-201ENST00000216211 ATP7AQ04656 1500 aa24.07■■□□□ 1.44
UPK3A-201ENST00000216211 KIAA1107Q9UPP5 1409 aa24.07■■□□□ 1.44
UPK3A-201ENST00000216211 INO80Q9ULG1 1556 aaPredicted RBP24.07■■□□□ 1.44
UPK3A-201ENST00000216211 ESF1Q9H501 851 aaKnown RBP24.04■■□□□ 1.44
UPK3A-201ENST00000216211 FBXO41Q8TF61 875 aa24.02■■□□□ 1.44
UPK3A-201ENST00000216211 UHRF1BP1Q6BDS2 1440 aa24.01■■□□□ 1.43
UPK3A-201ENST00000216211 STRCQ7RTU9 1775 aa24.01■■□□□ 1.43
UPK3A-201ENST00000216211 ZNF644Q9H582 1327 aaPredicted RBP24■■□□□ 1.43
UPK3A-201ENST00000216211 PLXNC1O60486 1568 aa23.99■■□□□ 1.43
UPK3A-201ENST00000216211 MROH2AA6NES4 1674 aa23.99■■□□□ 1.43
UPK3A-201ENST00000216211 ADGBQ8N7X0 1667 aa23.99■■□□□ 1.43
UPK3A-201ENST00000216211 LOC105371045A0A1W2PR82 267 aa23.98■■□□□ 1.43
UPK3A-201ENST00000216211 CNTLNQ9NXG0 1405 aa23.98■■□□□ 1.43
UPK3A-201ENST00000216211 A2MP01023 1474 aa23.98■■□□□ 1.43
UPK3A-201ENST00000216211 CLTCQ00610 1675 aaKnown RBP23.97■■□□□ 1.43
UPK3A-201ENST00000216211 NCOA2Q15596 1464 aa23.95■■□□□ 1.42
UPK3A-201ENST00000216211 MBD5Q9P267 1494 aa23.95■■□□□ 1.42
UPK3A-201ENST00000216211 CAMSAP2Q08AD1 1489 aa23.9■■□□□ 1.42
UPK3A-201ENST00000216211 VPS8Q8N3P4 1428 aa23.9■■□□□ 1.42
UPK3A-201ENST00000216211 ZMYM3Q14202 1370 aa23.89■■□□□ 1.41
UPK3A-201ENST00000216211 GGT6Q6P531 493 aa23.87■■□□□ 1.41
UPK3A-201ENST00000216211 RTEL1-TNFRSF6BF6WH68 1400 aa23.86■■□□□ 1.41
UPK3A-201ENST00000216211 CCDC141Q6ZP82 1450 aa23.86■■□□□ 1.41
UPK3A-201ENST00000216211 NPATQ14207 1427 aa23.85■■□□□ 1.41
UPK3A-201ENST00000216211 CERKQ8TCT0 537 aa23.85■■□□□ 1.41
UPK3A-201ENST00000216211 LRRC9Q6ZRR7 1453 aa23.85■■□□□ 1.41
UPK3A-201ENST00000216211 DMRT2Q9Y5R5 561 aa23.84■■□□□ 1.41
UPK3A-201ENST00000216211 MYO3AQ8NEV4 1616 aa23.82■■□□□ 1.4
UPK3A-201ENST00000216211 ARHGEF5Q12774 1597 aa23.81■■□□□ 1.4
UPK3A-201ENST00000216211 DHX29Q7Z478 1369 aaKnown RBP23.8■■□□□ 1.4
UPK3A-201ENST00000216211 CAMSAP1Q5T5Y3 1602 aa23.8■■□□□ 1.4
UPK3A-201ENST00000216211 ZNF142P52746 1687 aaPredicted RBP23.79■■□□□ 1.4
UPK3A-201ENST00000216211 PTPRTO14522 1441 aa23.78■■□□□ 1.4
UPK3A-201ENST00000216211 NCOA1Q15788 1441 aa23.78■■□□□ 1.4
UPK3A-201ENST00000216211 PTPRKQ15262 1439 aa23.77■■□□□ 1.4
UPK3A-201ENST00000216211 MAP3K1Q13233 1512 aa23.77■■□□□ 1.4
UPK3A-201ENST00000216211 RSPH4AQ5TD94 716 aa23.76■■□□□ 1.39
UPK3A-201ENST00000216211 PPP6R1Q9UPN7 881 aa23.76■■□□□ 1.39
UPK3A-201ENST00000216211 KANK4Q5T7N3 995 aaPredicted RBP23.75■■□□□ 1.39
UPK3A-201ENST00000216211 CEP170BQ9Y4F5 1589 aaPredicted RBP23.74■■□□□ 1.39
UPK3A-201ENST00000216211 KIF3BO15066 747 aa23.73■■□□□ 1.39
UPK3A-201ENST00000216211 TSPY4P0CV99 314 aa23.71■■□□□ 1.39
UPK3A-201ENST00000216211 TSPY10P0CW01 314 aa23.71■■□□□ 1.39
UPK3A-201ENST00000216211 MAST1Q9Y2H9 1570 aa23.69■■□□□ 1.38
UPK3A-201ENST00000216211 KDM5DQ9BY66 1539 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms