RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CPNE8Q86YQ8 564 aa7.07□□□□□ -1.28
CD44-239ENST00000639002 TMEM151BQ8IW70 566 aa7.07□□□□□ -1.28
CD44-239ENST00000639002 LGR4Q9BXB1 951 aa7.07□□□□□ -1.28
CD44-239ENST00000639002 CCSER2Q9H7U1 834 aa7.07□□□□□ -1.28
CD44-239ENST00000639002 STRIP2Q9ULQ0 834 aa7.07□□□□□ -1.28
CD44-239ENST00000639002 EMC9Q9Y3B6 208 aa7.07□□□□□ -1.28
CD44-239ENST00000639002 BACE2Q9Y5Z0 518 aa7.07□□□□□ -1.28
CD44-239ENST00000639002 PRR5P85299 388 aa7.06□□□□□ -1.28
CD44-239ENST00000639002 AMPD2Q01433 879 aa7.06□□□□□ -1.28
CD44-239ENST00000639002 TP53I13Q8NBR0 393 aaPredicted RBP7.06□□□□□ -1.28
CD44-239ENST00000639002 MTA3Q9BTC8 594 aa7.06□□□□□ -1.28
CD44-239ENST00000639002 RXFP1Q9HBX9 757 aa7.06□□□□□ -1.28
CD44-239ENST00000639002 AKT3Q9Y243 479 aa7.06□□□□□ -1.28
CD44-239ENST00000639002 A0A0G2JLL6 359 aaPredicted RBP7.05□□□□□ -1.28
CD44-239ENST00000639002 F8W031 263 aaPredicted RBP7.05□□□□□ -1.28
CD44-239ENST00000639002 ATF2P15336 505 aa7.05□□□□□ -1.28
CD44-239ENST00000639002 SEPHS1P49903 392 aa7.05□□□□□ -1.28
CD44-239ENST00000639002 MBLAC2Q68D91 279 aa7.05□□□□□ -1.28
CD44-239ENST00000639002 COPS5Q92905 334 aa7.05□□□□□ -1.28
CD44-239ENST00000639002 PWWP2AQ96N64 755 aa7.05□□□□□ -1.28
CD44-239ENST00000639002 XYLT2Q9H1B5 865 aa7.05□□□□□ -1.28
CD44-239ENST00000639002 ZCCHC4Q9H5U6 513 aa7.05□□□□□ -1.28
CD44-239ENST00000639002 SUGT1Q9Y2Z0 365 aa7.05□□□□□ -1.28
CD44-239ENST00000639002 RWDD3Q9Y3V2 267 aa7.05□□□□□ -1.28
CD44-239ENST00000639002 MRVI1Q9Y6F6 885 aa7.05□□□□□ -1.28
CD44-239ENST00000639002 A0A1W2PQJ5 194 aa7.04□□□□□ -1.28
CD44-239ENST00000639002 KCNH1O95259 989 aa7.04□□□□□ -1.28
CD44-239ENST00000639002 LIMS1P48059 325 aa7.04□□□□□ -1.28
CD44-239ENST00000639002 BVESQ8NE79 360 aa7.04□□□□□ -1.28
CD44-239ENST00000639002 ZNF428Q96B54 188 aa7.04□□□□□ -1.28
CD44-239ENST00000639002 MRGPRX3Q96LB0 322 aa7.04□□□□□ -1.28
CD44-239ENST00000639002 APBA2Q99767 749 aa7.04□□□□□ -1.28
CD44-239ENST00000639002 GPRC5CQ9NQ84 441 aa7.04□□□□□ -1.28
CD44-239ENST00000639002 GULP1Q9UBP9 304 aa7.04□□□□□ -1.28
CD44-239ENST00000639002 C7orf72A4D263 438 aa7.03□□□□□ -1.28
CD44-239ENST00000639002 ARNTLO00327 626 aa7.03□□□□□ -1.28
CD44-239ENST00000639002 SMAD7O15105 426 aaKnown RBP7.03□□□□□ -1.28
CD44-239ENST00000639002 PLA2G1BP04054 148 aaKnown RBP7.03□□□□□ -1.28
CD44-239ENST00000639002 CTSWP56202 376 aa7.03□□□□□ -1.28
CD44-239ENST00000639002 BCAS3Q9H6U6 928 aa7.03□□□□□ -1.28
CD44-239ENST00000639002 CLEC1BQ9P126 229 aa7.03□□□□□ -1.28
CD44-239ENST00000639002 NPHP3-ACAD11A0A0J9YXS1 232 aa7.02□□□□□ -1.29
CD44-239ENST00000639002 FFAR3O14843 346 aa7.02□□□□□ -1.29
CD44-239ENST00000639002 PAMP19021 973 aa7.02□□□□□ -1.29
CD44-239ENST00000639002 ERCC5P28715 1186 aaPredicted RBP7.02□□□□□ -1.29
CD44-239ENST00000639002 ETFBP38117 255 aa7.02□□□□□ -1.29
CD44-239ENST00000639002 MC3RP41968 323 aa7.02□□□□□ -1.29
CD44-239ENST00000639002 ZNF143P52747 638 aaPredicted RBP7.02□□□□□ -1.29
CD44-239ENST00000639002 SCRN1Q12765 414 aa7.02□□□□□ -1.29
CD44-239ENST00000639002 TRIM59Q8IWR1 403 aa7.02□□□□□ -1.29
CD44-239ENST00000639002 LZTR1Q8N653 840 aa7.02□□□□□ -1.29
CD44-239ENST00000639002 DPF3Q92784 378 aa7.02□□□□□ -1.29
CD44-239ENST00000639002 OTOL1A6NHN0 477 aaPredicted RBP7.01□□□□□ -1.29
CD44-239ENST00000639002 B2RBV5 119 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 TBX1O43435 398 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 ASGR2P07307 311 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 PLS3P13797 630 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 PFKLP17858 780 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 FOXO4P98177 505 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 CAP1Q01518 475 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 NCAPHQ15003 741 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 INF2Q27J81 1249 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 GTF2IRD2BQ6EKJ0 949 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 C6orf15Q6UXA7 325 aaPredicted RBP7.01□□□□□ -1.29
CD44-239ENST00000639002 GTF2IRD2Q86UP8 949 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 LINC01356Q8N9X3 169 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 SYT8Q8NBV8 401 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 FEZF2Q8TBJ5 459 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 PLEKHO2Q8TD55 490 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 MICAL1Q8TDZ2 1067 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 MMP19Q99542 508 aa7.01□□□□□ -1.29
CD44-239ENST00000639002 THBDP07204 575 aa7□□□□□ -1.29
CD44-239ENST00000639002 HTRA3P83110 453 aa7□□□□□ -1.29
CD44-239ENST00000639002 TARBP2Q15633 366 aaKnown RBP7□□□□□ -1.29
CD44-239ENST00000639002 VWA3BQ502W6 1294 aa7□□□□□ -1.29
CD44-239ENST00000639002 FNIP1Q8TF40 1166 aa7□□□□□ -1.29
CD44-239ENST00000639002 FRS2Q8WU20 508 aa7□□□□□ -1.29
CD44-239ENST00000639002 TSPAN17Q96FV3 270 aa7□□□□□ -1.29
CD44-239ENST00000639002 CAPN10Q9HC96 672 aa7□□□□□ -1.29
CD44-239ENST00000639002 CYP26B1Q9NR63 512 aa7□□□□□ -1.29
CD44-239ENST00000639002 NCANO14594 1321 aa7□□□□□ -1.29
CD44-239ENST00000639002 PRRG2O14669 202 aa6.99□□□□□ -1.29
CD44-239ENST00000639002 PMLP29590 882 aa6.99□□□□□ -1.29
CD44-239ENST00000639002 DLX2Q07687 328 aaPredicted RBP6.99□□□□□ -1.29
CD44-239ENST00000639002 MRM1Q6IN84 353 aaKnown RBP6.99□□□□□ -1.29
CD44-239ENST00000639002 FAM178BQ8IXR5 827 aa6.99□□□□□ -1.29
CD44-239ENST00000639002 NETO2Q8NC67 525 aa6.99□□□□□ -1.29
CD44-239ENST00000639002 NPLOC4Q8TAT6 608 aa6.99□□□□□ -1.29
CD44-239ENST00000639002 RNF38Q9H0F5 515 aa6.99□□□□□ -1.29
CD44-239ENST00000639002 NKX2-4Q9H2Z4 354 aa6.99□□□□□ -1.29
CD44-239ENST00000639002 ACTR10Q9NZ32 417 aa6.99□□□□□ -1.29
CD44-239ENST00000639002 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.99□□□□□ -1.29
CD44-239ENST00000639002 TMEFF2Q9UIK5 374 aaPredicted RBP6.99□□□□□ -1.29
CD44-239ENST00000639002 DBR1Q9UK59 544 aaKnown RBP6.99□□□□□ -1.29
CD44-239ENST00000639002 SIT1Q9Y3P8 196 aa6.99□□□□□ -1.29
CD44-239ENST00000639002 TRBV23OR9-2A0A075B6M9 112 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 B8ZZF3 427 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 NPHS1O60500 1241 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 FUCA1P04066 466 aa6.98□□□□□ -1.29
CD44-239ENST00000639002 NCAM1P13591 858 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms