RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 HIPK3Q9H422 1215 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 ZNF576Q9H609 170 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 TMEM265A0A087WTH1 108 aa19■□□□□ 0.63
CLN3-246ENST00000636228 ZEB2O60315 1214 aa19■□□□□ 0.63
CLN3-246ENST00000636228 IGHDP01880 384 aa19■□□□□ 0.63
CLN3-246ENST00000636228 GOLGA8HP0CJ92 632 aa19■□□□□ 0.63
CLN3-246ENST00000636228 SDSP20132 328 aa19■□□□□ 0.63
CLN3-246ENST00000636228 ZNF543Q08ER8 600 aa19■□□□□ 0.63
CLN3-246ENST00000636228 RASIP1Q5U651 963 aa19■□□□□ 0.63
CLN3-246ENST00000636228 UBA5Q9GZZ9 404 aa19■□□□□ 0.63
CLN3-246ENST00000636228 IL23AQ9NPF7 189 aa19■□□□□ 0.63
CLN3-246ENST00000636228 CXXC1Q9P0U4 656 aaPredicted RBP19■□□□□ 0.63
CLN3-246ENST00000636228 Q9Y3F1 56 aa19■□□□□ 0.63
CLN3-246ENST00000636228 NEDD4P46934 1319 aa19■□□□□ 0.63
CLN3-246ENST00000636228 CDH23Q9H251 3354 aa18.99■□□□□ 0.63
CLN3-246ENST00000636228 DUSP28Q4G0W2 176 aa18.99■□□□□ 0.63
CLN3-246ENST00000636228 ADD3Q9UEY8 706 aaKnown RBP18.99■□□□□ 0.63
CLN3-246ENST00000636228 EYSQ5T1H1 3165 aa18.98■□□□□ 0.63
CLN3-246ENST00000636228 FGBP02675 491 aa18.98■□□□□ 0.63
CLN3-246ENST00000636228 MYL3P08590 195 aa18.98■□□□□ 0.63
CLN3-246ENST00000636228 PSRC1Q6PGN9 363 aaPredicted RBP18.98■□□□□ 0.63
CLN3-246ENST00000636228 RNF207Q6ZRF8 634 aa18.98■□□□□ 0.63
CLN3-246ENST00000636228 OTOP2Q7RTS6 562 aa18.98■□□□□ 0.63
CLN3-246ENST00000636228 PLEKHM2Q8IWE5 1019 aa18.98■□□□□ 0.63
CLN3-246ENST00000636228 SMC5Q8IY18 1101 aa18.98■□□□□ 0.63
CLN3-246ENST00000636228 USP38Q8NB14 1042 aa18.98■□□□□ 0.63
CLN3-246ENST00000636228 TTC14Q96N46 770 aa18.98■□□□□ 0.63
CLN3-246ENST00000636228 NOC4LQ9BVI4 516 aaKnown RBP18.98■□□□□ 0.63
CLN3-246ENST00000636228 RWDD1Q9H446 243 aaPredicted RBP18.98■□□□□ 0.63
CLN3-246ENST00000636228 ZMYM6O95789 1325 aa18.98■□□□□ 0.63
CLN3-246ENST00000636228 ZNF213O14771 459 aa18.97■□□□□ 0.63
CLN3-246ENST00000636228 SNHG28P0DPA3 235 aa18.97■□□□□ 0.63
CLN3-246ENST00000636228 RPS6P62753 249 aaKnown RBP18.97■□□□□ 0.63
CLN3-246ENST00000636228 USH1GQ495M9 461 aa18.97■□□□□ 0.63
CLN3-246ENST00000636228 CWC27Q6UX04 472 aaKnown RBP18.97■□□□□ 0.63
CLN3-246ENST00000636228 CHD1LQ86WJ1 897 aa18.97■□□□□ 0.63
CLN3-246ENST00000636228 OR6J1Q8NGC5 347 aa18.97■□□□□ 0.63
CLN3-246ENST00000636228 PPM1EQ8WY54 764 aa18.97■□□□□ 0.63
CLN3-246ENST00000636228 HERVK_113Q902F9 699 aa18.97■□□□□ 0.63
CLN3-246ENST00000636228 COPS5Q92905 334 aa18.97■□□□□ 0.63
CLN3-246ENST00000636228 SCLYQ96I15 445 aa18.97■□□□□ 0.63
CLN3-246ENST00000636228 WNT8AQ9H1J5 351 aa18.97■□□□□ 0.63
CLN3-246ENST00000636228 ALDH8A1Q9H2A2 487 aaPredicted RBP18.97■□□□□ 0.63
CLN3-246ENST00000636228 TRMT13Q9NUP7 481 aaKnown RBP18.97■□□□□ 0.63
CLN3-246ENST00000636228 RBM47A0AV96 593 aaKnown RBP18.96■□□□□ 0.63
CLN3-246ENST00000636228 CYP2C9P11712 490 aa18.96■□□□□ 0.63
CLN3-246ENST00000636228 PDE4DQ08499 809 aa18.96■□□□□ 0.63
CLN3-246ENST00000636228 TICAM2Q86XR7 235 aa18.96■□□□□ 0.63
CLN3-246ENST00000636228 TBC1D5Q92609 795 aa18.96■□□□□ 0.63
CLN3-246ENST00000636228 ESR2Q92731 530 aa18.96■□□□□ 0.63
CLN3-246ENST00000636228 RNF41Q9H4P4 317 aaPredicted RBP18.96■□□□□ 0.63
CLN3-246ENST00000636228 PRDM12Q9H4Q4 367 aa18.96■□□□□ 0.63
CLN3-246ENST00000636228 KDM4AO75164 1064 aa18.95■□□□□ 0.62
CLN3-246ENST00000636228 PURAQ00577 322 aaKnown RBP18.95■□□□□ 0.62
CLN3-246ENST00000636228 EXOC6Q8TAG9 804 aa18.95■□□□□ 0.62
CLN3-246ENST00000636228 VWCEQ96DN2 955 aa18.95■□□□□ 0.62
CLN3-246ENST00000636228 NKX2-4Q9H2Z4 354 aa18.95■□□□□ 0.62
CLN3-246ENST00000636228 PRDM6Q9NQX0 595 aa18.95■□□□□ 0.62
CLN3-246ENST00000636228 LRRC37A2A6NM11 1700 aa18.94■□□□□ 0.62
CLN3-246ENST00000636228 PCP11498 1178 aaKnown RBP18.94■□□□□ 0.62
CLN3-246ENST00000636228 RABGGTBP53611 331 aa18.94■□□□□ 0.62
CLN3-246ENST00000636228 MFAP1P55081 439 aaKnown RBP18.94■□□□□ 0.62
CLN3-246ENST00000636228 NUCB1Q02818 461 aa18.94■□□□□ 0.62
CLN3-246ENST00000636228 POLR3EQ9NVU0 708 aa18.94■□□□□ 0.62
CLN3-246ENST00000636228 MSRAQ9UJ68 235 aa18.94■□□□□ 0.62
CLN3-246ENST00000636228 YBX2Q9Y2T7 364 aaKnown RBP18.94■□□□□ 0.62
CLN3-246ENST00000636228 WDR19Q8NEZ3 1342 aa18.94■□□□□ 0.62
CLN3-246ENST00000636228 B4E1Z4 1266 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 EDNRBP24530 442 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 CPT1AP50416 773 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 CHMP4BP1P59074 171 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 NBPF20Q3BBV1 942 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 FAM47CQ5HY64 1035 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 GPATCH4Q5T3I0 446 aaKnown RBP18.93■□□□□ 0.62
CLN3-246ENST00000636228 DGKHQ86XP1 1220 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 PNMA1Q8ND90 353 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 MTG1Q9BT17 334 aaPredicted RBP18.93■□□□□ 0.62
CLN3-246ENST00000636228 SEZ6LQ9BYH1 1024 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 OSBPL3Q9H4L5 887 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 VAT1LQ9HCJ6 419 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 GPHNQ9NQX3 736 aaPredicted RBP18.93■□□□□ 0.62
CLN3-246ENST00000636228 DIAPH3Q9NSV4 1193 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 TNKSO95271 1327 aa18.93■□□□□ 0.62
CLN3-246ENST00000636228 LCTP09848 1927 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 LOC102724159A0A0B4J2E5 919 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 ZBBXA8MT70 800 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 ARIH2O95376 493 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 TXNP10599 105 aaKnown RBP18.92■□□□□ 0.62
CLN3-246ENST00000636228 MYOGP15173 224 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 ADGRE1Q14246 886 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 PPP2R5BQ15173 497 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 PWP2Q15269 919 aaKnown RBP18.92■□□□□ 0.62
CLN3-246ENST00000636228 CDC37Q16543 378 aaPredicted RBP18.92■□□□□ 0.62
CLN3-246ENST00000636228 DEFB128Q7Z7B8 93 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 ADGRF4Q8IZF3 695 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 DNERQ8NFT8 737 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 TAAR1Q96RJ0 339 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 GAS2L1Q99501 681 aaPredicted RBP18.92■□□□□ 0.62
CLN3-246ENST00000636228 KAT14Q9H8E8 782 aa18.92■□□□□ 0.62
CLN3-246ENST00000636228 ZSWIM5Q9P217 1185 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms