RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 POLD4Q9HCU8 107 aa17.65■□□□□ 0.42
CPSF1-213ENST00000620219 MEIS1O00470 390 aa17.65■□□□□ 0.42
CPSF1-213ENST00000620219 GLIS2Q9BZE0 524 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-213ENST00000620219 PLCG1P19174 1290 aa17.65■□□□□ 0.42
CPSF1-213ENST00000620219 FUT2Q10981 343 aa17.65■□□□□ 0.42
CPSF1-213ENST00000620219 PLA2G4DQ86XP0 818 aa17.65■□□□□ 0.42
CPSF1-213ENST00000620219 IRS2Q9Y4H2 1338 aa17.65■□□□□ 0.42
CPSF1-213ENST00000620219 TBCAO75347 108 aaKnown RBP17.64■□□□□ 0.42
CPSF1-213ENST00000620219 CAP2P40123 477 aa17.64■□□□□ 0.42
CPSF1-213ENST00000620219 FANCCQ00597 558 aa17.64■□□□□ 0.42
CPSF1-213ENST00000620219 GABPAQ06546 454 aa17.64■□□□□ 0.42
CPSF1-213ENST00000620219 PYCARDQ9ULZ3 195 aa17.64■□□□□ 0.42
CPSF1-213ENST00000620219 KIAA1024Q9UPX6 916 aa17.64■□□□□ 0.42
CPSF1-213ENST00000620219 ATP2C1P98194 919 aaPredicted RBP17.64■□□□□ 0.41
CPSF1-213ENST00000620219 C9orf131Q5VYM1 1079 aa17.64■□□□□ 0.41
CPSF1-213ENST00000620219 ZMYND12Q9H0C1 365 aa17.64■□□□□ 0.41
CPSF1-213ENST00000620219 VPS16Q9H269 839 aa17.64■□□□□ 0.41
CPSF1-213ENST00000620219 DNAJC18Q9H819 358 aa17.64■□□□□ 0.41
CPSF1-213ENST00000620219 MLKLQ8NB16 471 aa17.64■□□□□ 0.41
CPSF1-213ENST00000620219 PAGE5Q96GU1 130 aa17.64■□□□□ 0.41
CPSF1-213ENST00000620219 MAN1B1Q9UKM7 699 aa17.64■□□□□ 0.41
CPSF1-213ENST00000620219 EIF2AK2P19525 551 aaKnown RBP17.64■□□□□ 0.41
CPSF1-213ENST00000620219 BRWD3Q6RI45 1802 aa17.63■□□□□ 0.41
CPSF1-213ENST00000620219 GAS7O60861 476 aa17.63■□□□□ 0.41
CPSF1-213ENST00000620219 SKILP12757 684 aa17.63■□□□□ 0.41
CPSF1-213ENST00000620219 GOLGA8FQ08AF8 430 aa17.63■□□□□ 0.41
CPSF1-213ENST00000620219 GOLGA8DPQ0D2H9 430 aa17.63■□□□□ 0.41
CPSF1-213ENST00000620219 ENOX2Q16206 610 aaKnown RBP17.63■□□□□ 0.41
CPSF1-213ENST00000620219 VCPKMTQ9H867 229 aa17.63■□□□□ 0.41
CPSF1-213ENST00000620219 hCG_1984214I3L0E3 225 aa17.63■□□□□ 0.41
CPSF1-213ENST00000620219 RPS12P25398 132 aaKnown RBP17.63■□□□□ 0.41
CPSF1-213ENST00000620219 FKBP1AP62942 108 aaKnown RBP17.63■□□□□ 0.41
CPSF1-213ENST00000620219 ZNF713Q8N859 430 aaPredicted RBP17.63■□□□□ 0.41
CPSF1-213ENST00000620219 TIGD1Q96MW7 591 aa17.63■□□□□ 0.41
CPSF1-213ENST00000620219 IPO7O95373 1038 aaKnown RBP17.62■□□□□ 0.41
CPSF1-213ENST00000620219 DGKZQ13574 1117 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 CUL4BQ13620 913 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 HERC4Q5GLZ8 1057 aaPredicted RBP17.62■□□□□ 0.41
CPSF1-213ENST00000620219 TCERG1LQ5VWI1 586 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 ANKS1AQ92625 1134 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 SLC39A2Q9NP94 309 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 TNRC6CQ9HCJ0 1690 aaKnown RBP17.62■□□□□ 0.41
CPSF1-213ENST00000620219 SYNRGQ9UMZ2 1314 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 ARHGAP4P98171 946 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 MCM6Q14566 821 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 HS1BP3Q53T59 392 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 APOBEC3FQ8IUX4 373 aaKnown RBP17.62■□□□□ 0.41
CPSF1-213ENST00000620219 NELFCDQ8IXH7 590 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 OTUD5Q96G74 571 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 CCDC40Q4G0X9 1142 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 CCAR2Q8N163 923 aaKnown RBP17.62■□□□□ 0.41
CPSF1-213ENST00000620219 TSG101Q99816 390 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 TMX1Q9H3N1 280 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 A0A1W2PRG0 241 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 IQCB1Q15051 598 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 LDHDQ86WU2 507 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 GPIHBP1Q8IV16 184 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 SHISA4Q96DD7 197 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 NAP1L4Q99733 375 aaKnown RBP17.62■□□□□ 0.41
CPSF1-213ENST00000620219 MRIQ9BWK5 157 aa17.62■□□□□ 0.41
CPSF1-213ENST00000620219 RPAP3Q9H6T3 665 aaPredicted RBP17.62■□□□□ 0.41
CPSF1-213ENST00000620219 FOSP01100 380 aaPredicted RBP17.61■□□□□ 0.41
CPSF1-213ENST00000620219 RPN1P04843 607 aaKnown RBP17.61■□□□□ 0.41
CPSF1-213ENST00000620219 STAT3P40763 770 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 PABPC4Q13310 644 aaKnown RBP eCLIP17.61■□□□□ 0.413e-6■■■□□ 17
CPSF1-213ENST00000620219 ARHGEF16Q5VV41 709 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 SLF1Q9BQI6 1058 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 RIC8AQ9NPQ8 531 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 KCNA3P22001 575 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 RBM10P98175 930 aaKnown RBP17.61■□□□□ 0.41
CPSF1-213ENST00000620219 ARL6IP4Q66PJ3 421 aaKnown RBP17.61■□□□□ 0.41
CPSF1-213ENST00000620219 HAUS3Q68CZ6 603 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 DHX40Q8IX18 779 aaKnown RBP17.61■□□□□ 0.41
CPSF1-213ENST00000620219 AGBL1Q96MI9 1066 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 RIOX1Q9H6W3 641 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 MMRN2Q9H8L6 949 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 DISC1Q9NRI5 854 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 COL5A3P25940 1745 aaPredicted RBP17.61■□□□□ 0.41
CPSF1-213ENST00000620219 LRP5O75197 1615 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 BACH1O14867 736 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 FAM160B2Q86V87 743 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 NELFBQ8WX92 580 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 SCN7AQ01118 1682 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 USP14P54578 494 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 TMEM132AQ24JP5 1023 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 NCAPG2Q86XI2 1143 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 ANKRD35Q8N283 1001 aa17.61■□□□□ 0.41
CPSF1-213ENST00000620219 PAK1Q13153 545 aa17.6■□□□□ 0.41
CPSF1-213ENST00000620219 PRPF38AQ8NAV1 312 aaKnown RBP17.6■□□□□ 0.41
CPSF1-213ENST00000620219 DNM3Q9UQ16 869 aa17.6■□□□□ 0.41
CPSF1-213ENST00000620219 GTPBP6O43824 516 aaPredicted RBP17.6■□□□□ 0.41
CPSF1-213ENST00000620219 DLK2Q6UY11 383 aa17.6■□□□□ 0.41
CPSF1-213ENST00000620219 TRPM4Q8TD43 1214 aa17.6■□□□□ 0.41
CPSF1-213ENST00000620219 CCDC144BQ3MJ40 725 aa17.6■□□□□ 0.41
CPSF1-213ENST00000620219 SMCR8Q8TEV9 937 aaPredicted RBP17.6■□□□□ 0.41
CPSF1-213ENST00000620219 GDAQ9Y2T3 454 aa17.6■□□□□ 0.41
CPSF1-213ENST00000620219 LRCH2Q5VUJ6 765 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 GPBP1Q86WP2 473 aa17.59■□□□□ 0.41
CPSF1-213ENST00000620219 ZNF579Q8NAF0 562 aaKnown RBP17.59■□□□□ 0.41
CPSF1-213ENST00000620219 CACTINQ8WUQ7 758 aaKnown RBP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms