RNA–Protein interactions for RNA: ENST00000602164.5

USF2-215, Transcript of upstream transcription factor 2, c-fos interacting, human

TSL 3

Gene USF2, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USF2-215	ENST00000602164	CMTR1	Q8N1G2	835 aa	Known RBP	31.11	■■■□□ 2.57
USF2-215	ENST00000602164	DIS3L	Q8TF46	1054 aa	Known RBP	31.11	■■■□□ 2.57
USF2-215	ENST00000602164	BRF1	Q92994	677 aa		31.11	■■■□□ 2.57
USF2-215	ENST00000602164	PCDHA1	Q9Y5I3	950 aa		31.11	■■■□□ 2.57
USF2-215	ENST00000602164	ASB14	A6NK59	587 aa		31.1	■■■□□ 2.57
USF2-215	ENST00000602164	ZBTB43	O43298	467 aa		31.1	■■■□□ 2.57
USF2-215	ENST00000602164	ALDH5A1	P51649	535 aa	Predicted RBP	31.1	■■■□□ 2.57
USF2-215	ENST00000602164	C8orf34	Q49A92	452 aa		31.1	■■■□□ 2.57
USF2-215	ENST00000602164	SYNE3	Q6ZMZ3	975 aa		31.1	■■■□□ 2.57
USF2-215	ENST00000602164	NID2	Q14112	1375 aa		31.09	■■■□□ 2.57
USF2-215	ENST00000602164	APOBR	Q0VD83	1088 aa		31.09	■■■□□ 2.57
USF2-215	ENST00000602164	ACVR2B	Q13705	512 aa		31.09	■■■□□ 2.57
USF2-215	ENST00000602164	ANO1	Q5XXA6	986 aa		31.09	■■■□□ 2.57
USF2-215	ENST00000602164	ABHD16B	Q9H3Z7	469 aa		31.09	■■■□□ 2.57
USF2-215	ENST00000602164	FAM217B	Q9NTX9	383 aa	Predicted RBP	31.09	■■■□□ 2.57
USF2-215	ENST00000602164	COL20A1	Q9P218	1284 aa		31.09	■■■□□ 2.57
USF2-215	ENST00000602164	LOC102724159	A0A0B4J2E5	919 aa		31.08	■■■□□ 2.57
USF2-215	ENST00000602164	FUT2	Q10981	343 aa		31.08	■■■□□ 2.57
USF2-215	ENST00000602164	PWP2	Q15269	919 aa	Known RBP	31.08	■■■□□ 2.57
USF2-215	ENST00000602164	MCF2L2	Q86YR7	1114 aa		31.08	■■■□□ 2.57
USF2-215	ENST00000602164	SYTL5	Q8TDW5	730 aa	Predicted RBP	31.08	■■■□□ 2.57
USF2-215	ENST00000602164	PIBF1	Q8WXW3	757 aa		31.08	■■■□□ 2.57
USF2-215	ENST00000602164	RRP36	Q96EU6	259 aa	Known RBP	31.08	■■■□□ 2.57
USF2-215	ENST00000602164	IL17RA	Q96F46	866 aa		31.08	■■■□□ 2.57
USF2-215	ENST00000602164	ADD3	Q9UEY8	706 aa	Known RBP	31.08	■■■□□ 2.57
USF2-215	ENST00000602164	ZHX1	Q9UKY1	873 aa	Predicted RBP	31.08	■■■□□ 2.57
USF2-215	ENST00000602164	CNTNAP5	Q8WYK1	1306 aa		31.07	■■■□□ 2.56
USF2-215	ENST00000602164	AKR1A1	P14550	325 aa		31.07	■■■□□ 2.56
USF2-215	ENST00000602164	HSD17B4	P51659	736 aa		31.07	■■■□□ 2.56
USF2-215	ENST00000602164	FGD1	P98174	961 aa		31.07	■■■□□ 2.56
USF2-215	ENST00000602164	RTN1	Q16799	776 aa		31.07	■■■□□ 2.56
USF2-215	ENST00000602164	PAWR	Q96IZ0	340 aa	Known RBP	31.07	■■■□□ 2.56
USF2-215	ENST00000602164	UPF3B	Q9BZI7	483 aa	Known RBP	31.07	■■■□□ 2.56
USF2-215	ENST00000602164	RBM28	Q9NW13	759 aa	Known RBP	31.07	■■■□□ 2.56
USF2-215	ENST00000602164	GOLGA8A	A7E2F4	631 aa		31.06	■■■□□ 2.56
USF2-215	ENST00000602164	GOLGA8B	A8MQT2	603 aa		31.06	■■■□□ 2.56
USF2-215	ENST00000602164	ADCY6	O43306	1168 aa		31.06	■■■□□ 2.56
USF2-215	ENST00000602164	EDNRB	P24530	442 aa		31.06	■■■□□ 2.56
USF2-215	ENST00000602164	CDC27	P30260	824 aa		31.06	■■■□□ 2.56
USF2-215	ENST00000602164	EVC	P57679	992 aa		31.06	■■■□□ 2.56
USF2-215	ENST00000602164	ANAPC15	P60006	121 aa		31.06	■■■□□ 2.56
USF2-215	ENST00000602164	TRAF1	Q13077	416 aa		31.06	■■■□□ 2.56
USF2-215	ENST00000602164	TOB2	Q14106	344 aa	Predicted RBP	31.06	■■■□□ 2.56
USF2-215	ENST00000602164	DNER	Q8NFT8	737 aa		31.06	■■■□□ 2.56
USF2-215	ENST00000602164	LENG1	Q96BZ8	264 aa	Predicted RBP	31.06	■■■□□ 2.56
USF2-215	ENST00000602164	CYP46A1	Q9Y6A2	500 aa		31.06	■■■□□ 2.56
USF2-215	ENST00000602164	EIF5B	O60841	1220 aa	Known RBP	31.05	■■■□□ 2.56
USF2-215	ENST00000602164	COL6A1	P12109	1028 aa		31.04	■■■□□ 2.56
USF2-215	ENST00000602164	FAM184B	Q9ULE4	1060 aa		31.04	■■■□□ 2.56
USF2-215	ENST00000602164	CFB	P00751	764 aa		31.03	■■■□□ 2.56
USF2-215	ENST00000602164	CCDC144B	Q3MJ40	725 aa		31.03	■■■□□ 2.56
USF2-215	ENST00000602164	CCDC82	Q8N4S0	544 aa		31.03	■■■□□ 2.56
USF2-215	ENST00000602164	TAAR1	Q96RJ0	339 aa		31.03	■■■□□ 2.56
USF2-215	ENST00000602164	SEC63	Q9UGP8	760 aa	Known RBP	31.03	■■■□□ 2.56
USF2-215	ENST00000602164	PDE4DIP	Q5VU43	2346 aa		31.03	■■■□□ 2.56
USF2-215	ENST00000602164	hCG_1642624	A0A1W2PR95	340 aa		31.02	■■■□□ 2.56
USF2-215	ENST00000602164	RARB	P10826	455 aa		31.02	■■■□□ 2.56
USF2-215	ENST00000602164	TAPT1	Q6NXT6	567 aa		31.02	■■■□□ 2.56
USF2-215	ENST00000602164	NECAB2	Q7Z6G3	386 aa		31.02	■■■□□ 2.56
USF2-215	ENST00000602164	FBXO16	Q8IX29	292 aa	Predicted RBP	31.02	■■■□□ 2.56
USF2-215	ENST00000602164	SAMD3	Q8N6K7	520 aa		31.02	■■■□□ 2.56
USF2-215	ENST00000602164	VTA1	Q9NP79	307 aa		31.02	■■■□□ 2.56
USF2-215	ENST00000602164	MAP3K20	Q9NYL2	800 aa	Known RBP	31.02	■■■□□ 2.56
USF2-215	ENST00000602164	METAP2	P50579	478 aa	Known RBP eCLIP	31.01	■■■□□ 2.55	1e-6	■■■□□ 16.3
USF2-215	ENST00000602164	XPNPEP3	Q9NQH7	507 aa		31.01	■■■□□ 2.55
USF2-215	ENST00000602164	DNM1L	O00429	736 aa		31	■■■□□ 2.55
USF2-215	ENST00000602164	ADAMTS4	O75173	837 aa		31	■■■□□ 2.55
USF2-215	ENST00000602164	ADD1	P35611	737 aa	Known RBP	31	■■■□□ 2.55
USF2-215	ENST00000602164	PPP2R5B	Q15173	497 aa		31	■■■□□ 2.55
USF2-215	ENST00000602164	LRRC41	Q15345	812 aa		31	■■■□□ 2.55
USF2-215	ENST00000602164	EEPD1	Q7L9B9	569 aa		31	■■■□□ 2.55
USF2-215	ENST00000602164	C11orf49	Q9H6J7	331 aa		31	■■■□□ 2.55
USF2-215	ENST00000602164	PDGFC	Q9NRA1	345 aa		31	■■■□□ 2.55
USF2-215	ENST00000602164	NAP1L2	Q9ULW6	460 aa	Predicted RBP	31	■■■□□ 2.55
USF2-215	ENST00000602164	ALPK3	Q96L96	1907 aa		31	■■■□□ 2.55
USF2-215	ENST00000602164	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	30.99	■■■□□ 2.55
USF2-215	ENST00000602164	PDIA3	P30101	505 aa	Known RBP	30.99	■■■□□ 2.55
USF2-215	ENST00000602164	HOXA13	P31271	388 aa	Predicted RBP	30.99	■■■□□ 2.55
USF2-215	ENST00000602164	ADCYAP1R1	P41586	468 aa		30.99	■■■□□ 2.55
USF2-215	ENST00000602164	GJC2	Q5T442	439 aa	Predicted RBP	30.99	■■■□□ 2.55
USF2-215	ENST00000602164	SYNRG	Q9UMZ2	1314 aa		30.98	■■■□□ 2.55
USF2-215	ENST00000602164	DUSP11	O75319	330 aa	Known RBP	30.98	■■■□□ 2.55
USF2-215	ENST00000602164	PGK1	P00558	417 aa		30.98	■■■□□ 2.55
USF2-215	ENST00000602164	ARRDC4	Q8NCT1	418 aa		30.98	■■■□□ 2.55
USF2-215	ENST00000602164	NSUN6	Q8TEA1	469 aa	Known RBP	30.98	■■■□□ 2.55
USF2-215	ENST00000602164	RMDN3	Q96TC7	470 aa		30.98	■■■□□ 2.55
USF2-215	ENST00000602164	PDRG1	Q9NUG6	133 aa		30.98	■■■□□ 2.55
USF2-215	ENST00000602164	GCOM1	H8Y6P7	765 aa	Predicted RBP	30.97	■■■□□ 2.55
USF2-215	ENST00000602164	POLR2M	P0CAP2	368 aa		30.97	■■■□□ 2.55
USF2-215	ENST00000602164	PDE4D	Q08499	809 aa		30.97	■■■□□ 2.55
USF2-215	ENST00000602164	UPF3A	Q9H1J1	476 aa	Known RBP	30.97	■■■□□ 2.55
USF2-215	ENST00000602164	PXMP2	Q9NR77	195 aa		30.97	■■■□□ 2.55
USF2-215	ENST00000602164	RBM47	A0AV96	593 aa	Known RBP	30.96	■■■□□ 2.55
USF2-215	ENST00000602164	TMEM63B	Q5T3F8	832 aa		30.96	■■■□□ 2.55
USF2-215	ENST00000602164	HTATIP2	Q9BUP3	242 aa		30.96	■■■□□ 2.55
USF2-215	ENST00000602164	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	30.96	■■■□□ 2.55
USF2-215	ENST00000602164	GNE	Q9Y223	722 aa	Known RBP	30.96	■■■□□ 2.55
USF2-215	ENST00000602164	CCDC196	A0A1B0GTZ2	297 aa		30.95	■■■□□ 2.55
USF2-215	ENST00000602164	SMPD1	P17405	629 aa		30.95	■■■□□ 2.55
USF2-215	ENST00000602164	TNFAIP2	Q03169	654 aa		30.95	■■■□□ 2.55

Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms