RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 VAT1LQ9HCJ6 419 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 UMODL1Q5DID0 1318 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 ASB14A6NK59 587 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 E7EWF7 191 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 CDK7P50613 346 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 LRIT3Q3SXY7 679 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 GNASQ5JWF2 1037 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 RNF207Q6ZRF8 634 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 IQCA1Q86XH1 822 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 TAAR1Q96RJ0 339 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 TSEN34Q9BSV6 310 aaKnown RBP12.48□□□□□ -0.41
VRK3-214ENST00000598553 KRT23Q9C075 422 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 LSG1Q9H089 658 aaKnown RBP12.48□□□□□ -0.41
VRK3-214ENST00000598553 MAD2L2Q9UI95 211 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 TBX21Q9UL17 535 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 RBM8AQ9Y5S9 174 aaKnown RBP12.48□□□□□ -0.41
VRK3-214ENST00000598553 TRIP12Q14669 1992 aaPredicted RBP12.48□□□□□ -0.41
VRK3-214ENST00000598553 PTPRSQ13332 1948 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 TANC1Q9C0D5 1861 aa12.48□□□□□ -0.41
VRK3-214ENST00000598553 KIAA0355O15063 1070 aa12.47□□□□□ -0.41
VRK3-214ENST00000598553 DYNC1LI2O43237 492 aaPredicted RBP12.47□□□□□ -0.41
VRK3-214ENST00000598553 CYTH3O43739 400 aa12.47□□□□□ -0.41
VRK3-214ENST00000598553 EDNRBP24530 442 aa12.47□□□□□ -0.41
VRK3-214ENST00000598553 GPATCH4Q5T3I0 446 aaKnown RBP12.47□□□□□ -0.41
VRK3-214ENST00000598553 IFIT1BQ5T764 474 aaKnown RBP12.47□□□□□ -0.41
VRK3-214ENST00000598553 KIAA1211Q6ZU35 1233 aa12.47□□□□□ -0.41
VRK3-214ENST00000598553 NOL8Q76FK4 1167 aaKnown RBP12.47□□□□□ -0.41
VRK3-214ENST00000598553 ANKRD33Q7Z3H0 272 aa12.47□□□□□ -0.41
VRK3-214ENST00000598553 FAM126BQ8IXS8 530 aa12.47□□□□□ -0.41
VRK3-214ENST00000598553 MB21D2Q8IYB1 491 aaPredicted RBP12.47□□□□□ -0.41
VRK3-214ENST00000598553 LBHD1Q9BQE6 289 aaPredicted RBP12.47□□□□□ -0.41
VRK3-214ENST00000598553 MYL10Q9BUA6 226 aa12.47□□□□□ -0.41
VRK3-214ENST00000598553 CTNNA3Q9UI47 895 aa12.47□□□□□ -0.41
VRK3-214ENST00000598553 MOXD2PA6NHM9 499 aa12.46□□□□□ -0.41
VRK3-214ENST00000598553 PARP1P09874 1014 aaKnown RBP12.46□□□□□ -0.41
VRK3-214ENST00000598553 FSCN1Q16658 493 aaKnown RBP12.46□□□□□ -0.41
VRK3-214ENST00000598553 ASPRV1Q53RT3 343 aa12.46□□□□□ -0.41
VRK3-214ENST00000598553 RAB11FIP4Q86YS3 637 aa12.46□□□□□ -0.41
VRK3-214ENST00000598553 SYTL5Q8TDW5 730 aaPredicted RBP12.46□□□□□ -0.41
VRK3-214ENST00000598553 MAP4K1Q92918 833 aa12.46□□□□□ -0.41
VRK3-214ENST00000598553 MTMR8Q96EF0 704 aa12.46□□□□□ -0.41
VRK3-214ENST00000598553 ZFP91Q96JP5 570 aaPredicted RBP12.46□□□□□ -0.41
VRK3-214ENST00000598553 UBAC1Q9BSL1 405 aa12.46□□□□□ -0.41
VRK3-214ENST00000598553 PPP1R12CQ9BZL4 782 aa12.46□□□□□ -0.41
VRK3-214ENST00000598553 VTA1Q9NP79 307 aa12.46□□□□□ -0.41
VRK3-214ENST00000598553 GTF3C3Q9Y5Q9 886 aa12.46□□□□□ -0.41
VRK3-214ENST00000598553 TET1Q8NFU7 2136 aa12.46□□□□□ -0.42
VRK3-214ENST00000598553 RBM47A0AV96 593 aaKnown RBP12.45□□□□□ -0.42
VRK3-214ENST00000598553 PALM3A6NDB9 673 aaPredicted RBP12.45□□□□□ -0.42
VRK3-214ENST00000598553 ARVCFO00192 962 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 GRM4Q14833 912 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 FAM109BQ6ICB4 259 aaPredicted RBP12.45□□□□□ -0.42
VRK3-214ENST00000598553 C16orf59Q7L2K0 433 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 IL31RAQ8NI17 732 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 IGDCC4Q8TDY8 1250 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 VWCEQ96DN2 955 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 GLT1D1Q96MS3 346 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 PIGSQ96S52 555 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 ESYT1Q9BSJ8 1104 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 WDR11Q9BZH6 1224 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 CNNM2Q9H8M5 875 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 TMEM39AQ9NV64 488 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 PRKAG2Q9UGJ0 569 aa12.45□□□□□ -0.42
VRK3-214ENST00000598553 U3KPZ7 1027 aaPredicted RBP12.45□□□□□ -0.42
VRK3-214ENST00000598553 ELP1O95163 1332 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 A0A0U1RQG5 324 aaPredicted RBP12.44□□□□□ -0.42
VRK3-214ENST00000598553 KLRF2D3W0D1 207 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 IFIT3O14879 490 aaKnown RBP12.44□□□□□ -0.42
VRK3-214ENST00000598553 DHX16O60231 1041 aaKnown RBP12.44□□□□□ -0.42
VRK3-214ENST00000598553 B4GALT4O60513 344 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 CD4P01730 458 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 RXRAP19793 462 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 NT5C2P49902 561 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 TROAPQ12815 778 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 DUSP28Q4G0W2 176 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 IQSEC1Q6DN90 963 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 HOMER1Q86YM7 354 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 SLC43A3Q8NBI5 491 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 PCSK9Q8NBP7 692 aaKnown RBP12.44□□□□□ -0.42
VRK3-214ENST00000598553 NUP133Q8WUM0 1156 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 RUFY2Q8WXA3 655 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 PIBF1Q8WXW3 757 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 FAM161BQ96MY7 647 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 TOX2Q96NM4 488 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 GUCD1Q96NT3 240 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 LRRC2Q9BYS8 371 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 TRPV6Q9H1D0 765 aa12.44□□□□□ -0.42
VRK3-214ENST00000598553 ABCB11O95342 1321 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 SLC27A2O14975 620 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 ACRP10323 421 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 RAG1P15918 1043 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 HOXA13P31271 388 aaPredicted RBP12.43□□□□□ -0.42
VRK3-214ENST00000598553 CYP2C18P33260 490 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 ITGA7Q13683 1181 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 CCDC178Q5BJE1 867 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 FBXO11Q86XK2 927 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 CMTR1Q8N1G2 835 aaKnown RBP12.43□□□□□ -0.42
VRK3-214ENST00000598553 DEFB123Q8N688 67 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 OR6J1Q8NGC5 347 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 NCOA7Q8NI08 942 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms