RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SF3A1Q15459 793 aaKnown RBP17.63■□□□□ 0.41
UPF1-206ENST00000598471 EARS2Q5JPH6 523 aaKnown RBP17.63■□□□□ 0.41
UPF1-206ENST00000598471 TTC38Q5R3I4 469 aa17.63■□□□□ 0.41
UPF1-206ENST00000598471 KCNG4Q8TDN1 519 aa17.63■□□□□ 0.41
UPF1-206ENST00000598471 SMCR8Q8TEV9 937 aaPredicted RBP17.63■□□□□ 0.41
UPF1-206ENST00000598471 TRERF1Q96PN7 1200 aa17.63■□□□□ 0.41
UPF1-206ENST00000598471 PARK7Q99497 189 aaKnown RBP17.63■□□□□ 0.41
UPF1-206ENST00000598471 PAGR1Q9BTK6 254 aa17.63■□□□□ 0.41
UPF1-206ENST00000598471 ZCCHC17Q9NP64 241 aaKnown RBP17.63■□□□□ 0.41
UPF1-206ENST00000598471 HOMER2Q9NSB8 354 aa17.63■□□□□ 0.41
UPF1-206ENST00000598471 TMEM260Q9NX78 707 aa17.63■□□□□ 0.41
UPF1-206ENST00000598471 RABGAP1Q9Y3P9 1069 aa17.63■□□□□ 0.41
UPF1-206ENST00000598471 ELP1O95163 1332 aa17.63■□□□□ 0.41
UPF1-206ENST00000598471 TESPA1A2RU30 521 aaPredicted RBP17.62■□□□□ 0.41
UPF1-206ENST00000598471 FAM205CA6NFA0 338 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 MEIS2O14770 477 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 OPLAHO14841 1288 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 ADAMTS3O15072 1205 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 ATP2B1P20020 1258 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 SREBF2Q12772 1141 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 INF2Q27J81 1249 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 USP17L6PQ6QN14 398 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 NEK8Q86SG6 692 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 JMYQ8N9B5 988 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 CHST13Q8NET6 341 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 LEO1Q8WVC0 666 aaPredicted RBP17.62■□□□□ 0.41
UPF1-206ENST00000598471 NAP1L4Q99733 375 aaKnown RBP17.62■□□□□ 0.41
UPF1-206ENST00000598471 ANO3Q9BYT9 981 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 ACAD9Q9H845 621 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 GDPD2Q9HCC8 539 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 FBXO40Q9UH90 709 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 RCOR1Q9UKL0 485 aa17.62■□□□□ 0.41
UPF1-206ENST00000598471 PRPF40AO75400 957 aaKnown RBP17.61■□□□□ 0.41
UPF1-206ENST00000598471 GCLCP48506 637 aaPredicted RBP17.61■□□□□ 0.41
UPF1-206ENST00000598471 TOB1P50616 345 aaPredicted RBP17.61■□□□□ 0.41
UPF1-206ENST00000598471 GHRHRQ02643 423 aa17.61■□□□□ 0.41
UPF1-206ENST00000598471 ORC2Q13416 577 aaPredicted RBP17.61■□□□□ 0.41
UPF1-206ENST00000598471 NOM1Q5C9Z4 860 aaKnown RBP17.61■□□□□ 0.41
UPF1-206ENST00000598471 RIOX2Q8IUF8 465 aa17.61■□□□□ 0.41
UPF1-206ENST00000598471 TBCKQ8TEA7 893 aa17.61■□□□□ 0.41
UPF1-206ENST00000598471 CLEC4DQ8WXI8 215 aa17.61■□□□□ 0.41
UPF1-206ENST00000598471 SPATC1LQ9H0A9 340 aa17.61■□□□□ 0.41
UPF1-206ENST00000598471 CLIC4Q9Y696 253 aa17.61■□□□□ 0.41
UPF1-206ENST00000598471 GOLGA6L4A6NEF3 574 aa17.6■□□□□ 0.41
UPF1-206ENST00000598471 NFIBO00712 420 aa17.6■□□□□ 0.41
UPF1-206ENST00000598471 SPTLC2O15270 562 aa17.6■□□□□ 0.41
UPF1-206ENST00000598471 SLC25A27O95847 323 aa17.6■□□□□ 0.41
UPF1-206ENST00000598471 HOXA13P31271 388 aaPredicted RBP17.6■□□□□ 0.41
UPF1-206ENST00000598471 HSD17B4P51659 736 aa17.6■□□□□ 0.41
UPF1-206ENST00000598471 LINC00301Q8NCQ3 95 aa17.6■□□□□ 0.41
UPF1-206ENST00000598471 FTOQ9C0B1 505 aaKnown RBP eCLIP17.6■□□□□ 0.41
UPF1-206ENST00000598471 BTBD7Q9P203 1132 aa17.6■□□□□ 0.41
UPF1-206ENST00000598471 PCDHB6Q9Y5E3 794 aa17.6■□□□□ 0.41
UPF1-206ENST00000598471 COL11A1P12107 1806 aaPredicted RBP17.6■□□□□ 0.41
UPF1-206ENST00000598471 RBBP6Q7Z6E9 1792 aaKnown RBP17.59■□□□□ 0.41
UPF1-206ENST00000598471 CYP2C8P10632 490 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 GCFC2P16383 781 aaKnown RBP17.59■□□□□ 0.41
UPF1-206ENST00000598471 MAP2K2P36507 400 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 CCNA1P78396 465 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 SLC39A14Q15043 492 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 LETM2Q2VYF4 491 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 MUM1L1Q5H9M0 696 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 NSMFQ6X4W1 530 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 RNF207Q6ZRF8 634 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 FCHSD1Q86WN1 690 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 FAM43AQ8N2R8 423 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 PGBD1Q96JS3 809 aa17.59■□□□□ 0.41
UPF1-206ENST00000598471 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.59■□□□□ 0.41
UPF1-206ENST00000598471 PPP6R2O75170 966 aa17.58■□□□□ 0.4
UPF1-206ENST00000598471 CNMDO75829 334 aa17.58■□□□□ 0.4
UPF1-206ENST00000598471 SREBF1P36956 1147 aa17.58■□□□□ 0.4
UPF1-206ENST00000598471 ME1P48163 572 aa17.58■□□□□ 0.4
UPF1-206ENST00000598471 NBR1Q14596 966 aa17.58■□□□□ 0.4
UPF1-206ENST00000598471 ZNF174Q15697 407 aa17.58■□□□□ 0.4
UPF1-206ENST00000598471 LMBRD1Q9NUN5 540 aa17.58■□□□□ 0.4
UPF1-206ENST00000598471 RBPJLQ9UBG7 517 aa17.58■□□□□ 0.4
UPF1-206ENST00000598471 RIPK3Q9Y572 518 aa17.58■□□□□ 0.4
UPF1-206ENST00000598471 MORC2Q9Y6X9 1032 aaPredicted RBP17.58■□□□□ 0.4
UPF1-206ENST00000598471 PFASO15067 1338 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 LAD1O00515 517 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 CCNT1O60563 726 aaKnown RBP17.57■□□□□ 0.4
UPF1-206ENST00000598471 MBD3O95983 291 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 MCM7P33993 719 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 USP11P51784 963 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 UBE2HP62256 183 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 ERVK-9P63128 1117 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 ERVK-24P63145 666 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 ARHGAP4P98171 946 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 NOGQ13253 232 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 PTPAQ15257 358 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 SKOR2Q2VWA4 1001 aaPredicted RBP17.57■□□□□ 0.4
UPF1-206ENST00000598471 NCAPG2Q86XI2 1143 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 SHCBP1Q8NEM2 672 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 GPRC5AQ8NFJ5 357 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 TBC1D5Q92609 795 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 PTPN18Q99952 460 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 MOV10L1Q9BXT6 1211 aaKnown RBP17.57■□□□□ 0.4
UPF1-206ENST00000598471 MROH8Q9H579 483 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 CEP350Q5VT06 3117 aa17.57■□□□□ 0.4
UPF1-206ENST00000598471 RPS6P62753 249 aaKnown RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms