RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 PCDHA6Q9UN73 950 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 PCDHA8Q9Y5H6 950 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 TMEM110-MUSTN1A8MSY1 372 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 GDF11O95390 407 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 H2AFXP16104 143 aaPredicted RBP13.8□□□□□ -0.2
USHBP1-207ENST00000597928 HPDP32754 393 aaPredicted RBP13.8□□□□□ -0.2
USHBP1-207ENST00000597928 STAT3P40763 770 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 CASP8Q14790 479 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 ZFYVE27Q5T4F4 411 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 PANX2Q96RD6 677 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 RAB34Q9BZG1 259 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 LACRTQ9GZZ8 138 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 GBP3Q9H0R5 595 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 FAM204AQ9H8W3 233 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 IL17RBQ9NRM6 502 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 LONP1P36776 959 aaKnown RBP13.8□□□□□ -0.2
USHBP1-207ENST00000597928 GSTO1P78417 241 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 ZNF579Q8NAF0 562 aaKnown RBP13.8□□□□□ -0.2
USHBP1-207ENST00000597928 GLIS3Q8NEA6 775 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 ZNF384Q8TF68 577 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 P2RX5Q93086 422 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 MTRQ99707 1265 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 PCDHB13Q9Y5F0 798 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 H3BQF6 201 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 ADCY7P51828 1080 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 SP4Q02446 784 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 PABPC4Q13310 644 aaKnown RBP eCLIP13.8□□□□□ -0.2
USHBP1-207ENST00000597928 PRR16Q569H4 304 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 TAF4BQ92750 862 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 CCDC113Q9H0I3 377 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 TCEAL9Q9UHQ7 104 aa13.8□□□□□ -0.2
USHBP1-207ENST00000597928 SORBS3O60504 671 aa13.79□□□□□ -0.2
USHBP1-207ENST00000597928 NFRKBQ6P4R8 1299 aa13.79□□□□□ -0.2
USHBP1-207ENST00000597928 SH2D3AQ9BRG2 576 aa13.79□□□□□ -0.2
USHBP1-207ENST00000597928 E9PMD0 336 aa13.79□□□□□ -0.2
USHBP1-207ENST00000597928 TRIM66O15016 1216 aa13.79□□□□□ -0.2
USHBP1-207ENST00000597928 CLIC2O15247 247 aa13.79□□□□□ -0.2
USHBP1-207ENST00000597928 GFPT1Q06210 699 aaPredicted RBP13.79□□□□□ -0.2
USHBP1-207ENST00000597928 EHHADHQ08426 723 aa13.79□□□□□ -0.2
USHBP1-207ENST00000597928 TXLNBQ8N3L3 684 aa13.79□□□□□ -0.2
USHBP1-207ENST00000597928 MS4A14Q96JA4 679 aa13.79□□□□□ -0.2
USHBP1-207ENST00000597928 ALS2CR12Q96Q35 445 aa13.79□□□□□ -0.2
USHBP1-207ENST00000597928 LSM14BQ9BX40 385 aaKnown RBP13.79□□□□□ -0.2
USHBP1-207ENST00000597928 HOXA13P31271 388 aaPredicted RBP13.78□□□□□ -0.2
USHBP1-207ENST00000597928 TMEM139Q8IV31 216 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 FAM114A1Q8IWE2 563 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 HYOU1Q9Y4L1 999 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 AFDNP55196 1824 aaKnown RBP13.78□□□□□ -0.2
USHBP1-207ENST00000597928 KIF13AQ9H1H9 1805 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 BICDL2A1A5D9 508 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 TUBB4AP04350 444 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 DNM2P50570 870 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 PPP2R5BQ15173 497 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 EZH2Q15910 746 aaKnown RBP13.78□□□□□ -0.2
USHBP1-207ENST00000597928 ZNF512BQ96KM6 892 aaPredicted RBP13.78□□□□□ -0.2
USHBP1-207ENST00000597928 PCDHA12Q9UN75 941 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 SAMM50Q9Y512 469 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 CYTH3O43739 400 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 SLC1A4P43007 532 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 SARSP49591 514 aaKnown RBP13.78□□□□□ -0.2
USHBP1-207ENST00000597928 MKRN4PQ13434 485 aaPredicted RBP13.78□□□□□ -0.2
USHBP1-207ENST00000597928 RNF187Q5TA31 235 aaPredicted RBP13.78□□□□□ -0.2
USHBP1-207ENST00000597928 C12orf60Q5U649 245 aa13.78□□□□□ -0.2
USHBP1-207ENST00000597928 UHMK1Q8TAS1 419 aaKnown RBP13.78□□□□□ -0.2
USHBP1-207ENST00000597928 NKRFO15226 690 aaKnown RBP eCLIP13.77□□□□□ -0.2
USHBP1-207ENST00000597928 ABCB4P21439 1286 aa13.77□□□□□ -0.2
USHBP1-207ENST00000597928 GPSM2P81274 684 aa13.77□□□□□ -0.2
USHBP1-207ENST00000597928 CCDC93Q567U6 631 aa13.77□□□□□ -0.2
USHBP1-207ENST00000597928 CNNM4Q6P4Q7 775 aa13.77□□□□□ -0.2
USHBP1-207ENST00000597928 KRT25Q7Z3Z0 450 aa13.77□□□□□ -0.2
USHBP1-207ENST00000597928 NAA15Q9BXJ9 866 aaKnown RBP13.77□□□□□ -0.2
USHBP1-207ENST00000597928 HGSO14964 777 aaPredicted RBP13.77□□□□□ -0.21
USHBP1-207ENST00000597928 MAP9Q49MG5 647 aa13.77□□□□□ -0.21
USHBP1-207ENST00000597928 TAX1BP1Q86VP1 789 aa13.77□□□□□ -0.21
USHBP1-207ENST00000597928 GPBP1Q86WP2 473 aa13.77□□□□□ -0.21
USHBP1-207ENST00000597928 ADAMTS1Q9UHI8 967 aa13.77□□□□□ -0.21
USHBP1-207ENST00000597928 USP17L10C9JJH3 530 aa13.77□□□□□ -0.21
USHBP1-207ENST00000597928 AKR1B1P15121 316 aa13.77□□□□□ -0.21
USHBP1-207ENST00000597928 CFBP00751 764 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 FAM133AQ8N9E0 248 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 LARP4BQ92615 738 aaKnown RBP13.76□□□□□ -0.21
USHBP1-207ENST00000597928 DDX12PQ92771 950 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 NUDT12Q9BQG2 462 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 PYM1Q9BRP8 204 aaKnown RBP13.76□□□□□ -0.21
USHBP1-207ENST00000597928 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.76□□□□□ -0.21
USHBP1-207ENST00000597928 RNF40O75150 1001 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 RBM26Q5T8P6 1007 aaKnown RBP13.76□□□□□ -0.21
USHBP1-207ENST00000597928 CCDC174Q6PII3 467 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 FBXL16Q8N461 479 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 PSTPIP2Q9H939 334 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 DDX25Q9UHL0 483 aaKnown RBP13.76□□□□□ -0.21
USHBP1-207ENST00000597928 USP21Q9UK80 565 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 TLDC2A0PJX2 215 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 LRRC53A6NM62 1247 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 TBX2Q13207 712 aaPredicted RBP13.76□□□□□ -0.21
USHBP1-207ENST00000597928 CERS3Q8IU89 383 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 VEZTQ9HBM0 779 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 CD209Q9NNX6 404 aa13.76□□□□□ -0.21
USHBP1-207ENST00000597928 LRRC37A3O60309 1634 aa13.75□□□□□ -0.21
USHBP1-207ENST00000597928 CCDC151A5D8V7 595 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms