RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 CALM3P0DP25 149 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 COL6A1P12109 1028 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 SMARCA1P28370 1054 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 CDC27P30260 824 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 ALDH5A1P51649 535 aaPredicted RBP12.94□□□□□ -0.34
VRK3-210ENST00000596121 TOB2Q14106 344 aaPredicted RBP12.94□□□□□ -0.34
VRK3-210ENST00000596121 C8orf34Q49A92 452 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 FBXL16Q8N461 479 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 CCDC82Q8N4S0 544 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 BRF1Q92994 677 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 TAAR1Q96RJ0 339 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 UPF3BQ9BZI7 483 aaKnown RBP12.94□□□□□ -0.34
VRK3-210ENST00000596121 PDGFCQ9NRA1 345 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 ZHX1Q9UKY1 873 aaPredicted RBP12.94□□□□□ -0.34
VRK3-210ENST00000596121 CNPY2Q9Y2B0 182 aa12.94□□□□□ -0.34
VRK3-210ENST00000596121 MRPL11Q9Y3B7 192 aaKnown RBP12.94□□□□□ -0.34
VRK3-210ENST00000596121 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.93□□□□□ -0.34
VRK3-210ENST00000596121 ASB14A6NK59 587 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 ZBTB43O43298 467 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 PSMA5P28066 241 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 KIF5BP33176 963 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 HSD17B4P51659 736 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 GHRHRQ02643 423 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 CCDC144BQ3MJ40 725 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 GJC2Q5T442 439 aaPredicted RBP12.93□□□□□ -0.34
VRK3-210ENST00000596121 TAPT1Q6NXT6 567 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 RUFY3Q7L099 469 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 EEPD1Q7L9B9 569 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 ANKLE1Q8NAG6 615 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 LZTS2Q9BRK4 669 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 LARP6Q9BRS8 491 aaKnown RBP12.93□□□□□ -0.34
VRK3-210ENST00000596121 TM6SF1Q9BZW5 370 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 ABHD16BQ9H3Z7 469 aa12.93□□□□□ -0.34
VRK3-210ENST00000596121 MYADML2A6NDP7 307 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 MSCO60682 206 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 PGK1P00558 417 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 CAPN2P17655 700 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 EDNRBP24530 442 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 HOXA13P31271 388 aaPredicted RBP12.92□□□□□ -0.34
VRK3-210ENST00000596121 ADD1P35611 737 aaKnown RBP12.92□□□□□ -0.34
VRK3-210ENST00000596121 EVCP57679 992 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 LRRC41Q15345 812 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 RTN1Q16799 776 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 FBXO16Q8IX29 292 aaPredicted RBP12.92□□□□□ -0.34
VRK3-210ENST00000596121 RRP36Q96EU6 259 aaKnown RBP12.92□□□□□ -0.34
VRK3-210ENST00000596121 IL17RAQ96F46 866 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 FRMPD3Q5JV73 1810 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 MYH6P13533 1939 aa12.92□□□□□ -0.34
VRK3-210ENST00000596121 CNTNAP5Q8WYK1 1306 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 GOLGA8AA7E2F4 631 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 GOLGA8BA8MQT2 603 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 CTAGE5O15320 804 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 ADAMTS4O75173 837 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 CFBP00751 764 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 AKR1A1P14550 325 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 SMPD1P17405 629 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 ADCYAP1R1P41586 468 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 GNAQP50148 359 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 SYNE3Q6ZMZ3 975 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 NECAB2Q7Z6G3 386 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 MCF2L2Q86YR7 1114 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 C11orf49Q9H6J7 331 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 XPNPEP3Q9NQH7 507 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 ADD3Q9UEY8 706 aaKnown RBP12.91□□□□□ -0.34
VRK3-210ENST00000596121 FAM184BQ9ULE4 1060 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 CYP46A1Q9Y6A2 500 aa12.91□□□□□ -0.34
VRK3-210ENST00000596121 PPFIA3O75145 1194 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 RARBP10826 455 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 PDIA3P30101 505 aaKnown RBP12.9□□□□□ -0.34
VRK3-210ENST00000596121 RCAN1P53805 252 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 FGD1P98174 961 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 NTRK3Q16288 839 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 CCSAPQ6IQ19 270 aaPredicted RBP12.9□□□□□ -0.34
VRK3-210ENST00000596121 TYW1BQ6NUM6 668 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 KLHDC9Q8NEP7 349 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 DNERQ8NFT8 737 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 GPKOWQ92917 476 aaPredicted RBP eCLIP12.9□□□□□ -0.34
VRK3-210ENST00000596121 MAF1Q9H063 256 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 RBM28Q9NW13 759 aaKnown RBP12.9□□□□□ -0.34
VRK3-210ENST00000596121 PCDH10Q9P2E7 1040 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 NAP1L2Q9ULW6 460 aaPredicted RBP12.9□□□□□ -0.34
VRK3-210ENST00000596121 GNEQ9Y223 722 aaKnown RBP12.9□□□□□ -0.34
VRK3-210ENST00000596121 V9GY48 417 aaPredicted RBP12.9□□□□□ -0.34
VRK3-210ENST00000596121 CEP290O15078 2479 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 LRRC37A2A6NM11 1700 aa12.9□□□□□ -0.34
VRK3-210ENST00000596121 SYNRGQ9UMZ2 1314 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 RBM47A0AV96 593 aaKnown RBP12.89□□□□□ -0.35
VRK3-210ENST00000596121 DNM1LO00429 736 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 MEIS2O14770 477 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 DUSP11O75319 330 aaKnown RBP12.89□□□□□ -0.35
VRK3-210ENST00000596121 MYCNP04198 464 aaPredicted RBP12.89□□□□□ -0.35
VRK3-210ENST00000596121 EIF2AK2P19525 551 aaKnown RBP12.89□□□□□ -0.35
VRK3-210ENST00000596121 WWC2Q6AWC2 1192 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 USP17L6PQ6QN14 398 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 ARRDC4Q8NCT1 418 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 IL31RAQ8NI17 732 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 ZFP91Q96JP5 570 aaPredicted RBP12.89□□□□□ -0.35
VRK3-210ENST00000596121 RMDN3Q96TC7 470 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 UPF3AQ9H1J1 476 aaKnown RBP12.89□□□□□ -0.35
VRK3-210ENST00000596121 NCOA5Q9HCD5 579 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms