RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 ITGA7Q13683 1181 aa14.68□□□□□ -0.06
UPF1-203ENST00000594504 FSCN1Q16658 493 aaKnown RBP14.68□□□□□ -0.06
UPF1-203ENST00000594504 TBC1D10CQ8IV04 446 aa14.68□□□□□ -0.06
UPF1-203ENST00000594504 TMEM199Q8N511 208 aa14.68□□□□□ -0.06
UPF1-203ENST00000594504 SLC43A3Q8NBI5 491 aa14.68□□□□□ -0.06
UPF1-203ENST00000594504 GOLGA8HP0CJ92 632 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 FOSL2P15408 326 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 DNAJB2P25686 324 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 CALML3P27482 149 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 ALDH5A1P51649 535 aaPredicted RBP14.67□□□□□ -0.06
UPF1-203ENST00000594504 CCL23P55773 120 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 PPIGQ13427 754 aaKnown RBP eCLIP14.67□□□□□ -0.064e-7■□□□□ 11.1
UPF1-203ENST00000594504 BMP2KLQ5H9B9 411 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 AKNAD1Q5T1N1 836 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 SLC30A10Q6XR72 485 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 MFSD6Q6ZSS7 791 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 SKAP1Q86WV1 359 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 MORC4Q8TE76 937 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 PPP1R13LQ8WUF5 828 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 CLEC4DQ8WXI8 215 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 TRPV6Q9H1D0 765 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 CPVLQ9H3G5 476 aa14.67□□□□□ -0.06
UPF1-203ENST00000594504 ZMYM6O95789 1325 aa14.66□□□□□ -0.06
UPF1-203ENST00000594504 RAD50Q92878 1312 aa14.66□□□□□ -0.06
UPF1-203ENST00000594504 B4GALT4O60513 344 aa14.66□□□□□ -0.06
UPF1-203ENST00000594504 CHMLP26374 656 aa14.66□□□□□ -0.06
UPF1-203ENST00000594504 RUFY2Q8WXA3 655 aa14.66□□□□□ -0.06
UPF1-203ENST00000594504 UBA5Q9GZZ9 404 aa14.66□□□□□ -0.06
UPF1-203ENST00000594504 ZNF576Q9H609 170 aa14.66□□□□□ -0.06
UPF1-203ENST00000594504 VTA1Q9NP79 307 aa14.66□□□□□ -0.06
UPF1-203ENST00000594504 NEDD4P46934 1319 aa14.66□□□□□ -0.06
UPF1-203ENST00000594504 ZEB2O60315 1214 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 CABYRO75952 493 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 ZNF543Q08ER8 600 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 DUSP28Q4G0W2 176 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 RASIP1Q5U651 963 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 RNF207Q6ZRF8 634 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 TBC1D5Q92609 795 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 TIFAQ96CG3 184 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 TTC14Q96N46 770 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 PBX4Q9BYU1 374 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 WDR11Q9BZH6 1224 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 HIPK3Q9H422 1215 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 CXXC1Q9P0U4 656 aaPredicted RBP14.65□□□□□ -0.06
UPF1-203ENST00000594504 Q9Y3F1 56 aa14.65□□□□□ -0.06
UPF1-203ENST00000594504 ZNF213O14771 459 aa14.64□□□□□ -0.07
UPF1-203ENST00000594504 FGBP02675 491 aa14.64□□□□□ -0.07
UPF1-203ENST00000594504 MYL3P08590 195 aa14.64□□□□□ -0.07
UPF1-203ENST00000594504 SNHG28P0DPA3 235 aa14.64□□□□□ -0.07
UPF1-203ENST00000594504 RPS6P62753 249 aaKnown RBP14.64□□□□□ -0.07
UPF1-203ENST00000594504 USH1GQ495M9 461 aa14.64□□□□□ -0.07
UPF1-203ENST00000594504 COPS5Q92905 334 aa14.64□□□□□ -0.07
UPF1-203ENST00000594504 SCLYQ96I15 445 aa14.64□□□□□ -0.07
UPF1-203ENST00000594504 IL23AQ9NPF7 189 aa14.64□□□□□ -0.07
UPF1-203ENST00000594504 ADD3Q9UEY8 706 aaKnown RBP14.64□□□□□ -0.07
UPF1-203ENST00000594504 TMEM265A0A087WTH1 108 aa14.63□□□□□ -0.07
UPF1-203ENST00000594504 RBM47A0AV96 593 aaKnown RBP14.63□□□□□ -0.07
UPF1-203ENST00000594504 OTOP2Q7RTS6 562 aa14.63□□□□□ -0.07
UPF1-203ENST00000594504 USP38Q8NB14 1042 aa14.63□□□□□ -0.07
UPF1-203ENST00000594504 OR6J1Q8NGC5 347 aa14.63□□□□□ -0.07
UPF1-203ENST00000594504 DSCC1Q9BVC3 393 aa14.63□□□□□ -0.07
UPF1-203ENST00000594504 NOC4LQ9BVI4 516 aaKnown RBP14.63□□□□□ -0.07
UPF1-203ENST00000594504 WNT8AQ9H1J5 351 aa14.63□□□□□ -0.07
UPF1-203ENST00000594504 B4E1Z4 1266 aa14.62□□□□□ -0.07
UPF1-203ENST00000594504 KDM4AO75164 1064 aa14.62□□□□□ -0.07
UPF1-203ENST00000594504 CYP2C9P11712 490 aa14.62□□□□□ -0.07
UPF1-203ENST00000594504 PDE4DQ08499 809 aa14.62□□□□□ -0.07
UPF1-203ENST00000594504 PSRC1Q6PGN9 363 aaPredicted RBP14.62□□□□□ -0.07
UPF1-203ENST00000594504 PPM1EQ8WY54 764 aa14.62□□□□□ -0.07
UPF1-203ENST00000594504 HERVK_113Q902F9 699 aa14.62□□□□□ -0.07
UPF1-203ENST00000594504 ESR2Q92731 530 aa14.62□□□□□ -0.07
UPF1-203ENST00000594504 VWCEQ96DN2 955 aa14.62□□□□□ -0.07
UPF1-203ENST00000594504 IL25Q9H293 177 aa14.62□□□□□ -0.07
UPF1-203ENST00000594504 ALDH8A1Q9H2A2 487 aaPredicted RBP14.62□□□□□ -0.07
UPF1-203ENST00000594504 PRDM6Q9NQX0 595 aa14.62□□□□□ -0.07
UPF1-203ENST00000594504 TRMT13Q9NUP7 481 aaKnown RBP14.62□□□□□ -0.07
UPF1-203ENST00000594504 GBF1Q92538 1859 aa14.61□□□□□ -0.07
UPF1-203ENST00000594504 RBAK-RBAKDNI3L0D1 243 aa14.61□□□□□ -0.07
UPF1-203ENST00000594504 SGSM2O43147 1006 aa14.61□□□□□ -0.07
UPF1-203ENST00000594504 RABGGTBP53611 331 aa14.61□□□□□ -0.07
UPF1-203ENST00000594504 PURAQ00577 322 aaKnown RBP14.61□□□□□ -0.07
UPF1-203ENST00000594504 DGKHQ86XP1 1220 aa14.61□□□□□ -0.07
UPF1-203ENST00000594504 TAAR1Q96RJ0 339 aa14.61□□□□□ -0.07
UPF1-203ENST00000594504 NKX2-4Q9H2Z4 354 aa14.61□□□□□ -0.07
UPF1-203ENST00000594504 RNF41Q9H4P4 317 aaPredicted RBP14.61□□□□□ -0.07
UPF1-203ENST00000594504 PRDM12Q9H4Q4 367 aa14.61□□□□□ -0.07
UPF1-203ENST00000594504 VAT1LQ9HCJ6 419 aa14.61□□□□□ -0.07
UPF1-203ENST00000594504 ZSWIM5Q9P217 1185 aa14.61□□□□□ -0.07
UPF1-203ENST00000594504 ARIH2O95376 493 aa14.6□□□□□ -0.07
UPF1-203ENST00000594504 PCP11498 1178 aaKnown RBP14.6□□□□□ -0.07
UPF1-203ENST00000594504 CDC37Q16543 378 aaPredicted RBP14.6□□□□□ -0.07
UPF1-203ENST00000594504 ADGRF4Q8IZF3 695 aa14.6□□□□□ -0.07
UPF1-203ENST00000594504 PNMA1Q8ND90 353 aa14.6□□□□□ -0.07
UPF1-203ENST00000594504 POLR3EQ9NVU0 708 aa14.6□□□□□ -0.07
UPF1-203ENST00000594504 CTNNA3Q9UI47 895 aa14.6□□□□□ -0.07
UPF1-203ENST00000594504 YBX2Q9Y2T7 364 aaKnown RBP14.6□□□□□ -0.07
UPF1-203ENST00000594504 WDR19Q8NEZ3 1342 aa14.6□□□□□ -0.07
UPF1-203ENST00000594504 SCN5AQ14524 2016 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 TXNP10599 105 aaKnown RBP14.59□□□□□ -0.07
UPF1-203ENST00000594504 MYOGP15173 224 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms