RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 CCDC42Q96M95 316 aa16.56■□□□□ 0.24
SMARCA4-219ENST00000592604 PLIN2Q99541 437 aa16.56■□□□□ 0.24
SMARCA4-219ENST00000592604 USO1O60763 962 aaKnown RBP16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 LCA5LO95447 670 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 MTIF2P46199 727 aaKnown RBP16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 PDE4DQ08499 809 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 STK4Q13043 487 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 PNMA1Q8ND90 353 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 FAM76AQ8TAV0 307 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 GDAP1L1Q96MZ0 367 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 IL17RBQ9NRM6 502 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 LRWD1Q9UFC0 647 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 GOLGA6BA6NDN3 693 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 TACC1O75410 805 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 PLCG1P19174 1290 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 DNAJC21Q5F1R6 531 aaKnown RBP16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 EP400NLQ6ZTU2 488 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 GSPT2Q8IYD1 628 aaKnown RBP16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 MAD2L2Q9UI95 211 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 MYH10P35580 1976 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 MYH14Q7Z406 1995 aaKnown RBP16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 TAF1P21675 1872 aa16.55■□□□□ 0.24
SMARCA4-219ENST00000592604 FKBP15Q5T1M5 1219 aa16.54■□□□□ 0.24
SMARCA4-219ENST00000592604 CABP7Q86V35 215 aa16.54■□□□□ 0.24
SMARCA4-219ENST00000592604 SH2D4AQ9H788 454 aa16.54■□□□□ 0.24
SMARCA4-219ENST00000592604 TCP11L1Q9NUJ3 509 aa16.54■□□□□ 0.24
SMARCA4-219ENST00000592604 BARHL2Q9NY43 387 aa16.54■□□□□ 0.24
SMARCA4-219ENST00000592604 SLC35G1Q2M3R5 365 aa16.54■□□□□ 0.24
SMARCA4-219ENST00000592604 PCMTD1Q96MG8 357 aaPredicted RBP16.54■□□□□ 0.24
SMARCA4-219ENST00000592604 DOT1LQ8TEK3 1739 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 STXBP3O00186 592 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 ATP6V1AP38606 617 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 TFAP4Q01664 338 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 PPM1EQ8WY54 764 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 PCDHA13Q9Y5I0 950 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 GOLGA6CA6NDK9 693 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 GOLGA6DP0CG33 693 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 KRT26Q7Z3Y9 468 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 SH3GL2Q99962 352 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 GOLGA6AQ9NYA3 693 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 ARHGAP20Q9P2F6 1191 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 CAPN6Q9Y6Q1 641 aa16.53■□□□□ 0.24
SMARCA4-219ENST00000592604 CYTH3O43739 400 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 TXNRD1Q16881 649 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 CCDC96Q2M329 555 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 CCDC178Q5BJE1 867 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 C3orf67Q6ZVT6 689 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 SPATA4Q8NEY3 305 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 EEF2KMTQ96G04 330 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 LRRC1Q9BTT6 524 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 IFIH1Q9BYX4 1025 aaKnown RBP16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 SIK3Q9Y2K2 1263 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 CCDC88AQ3V6T2 1871 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 PLEKP08567 350 aaPredicted RBP16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 OR52Z1P0C646 297 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 FCER1AP12319 257 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 TCP1P17987 556 aaKnown RBP16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 ASIC1P78348 528 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 AMPD3Q01432 767 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 PPFIA1Q13136 1202 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 CENPPQ6IPU0 288 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 CNNM4Q6P4Q7 775 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 EFCAB13Q8IY85 973 aa16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 DMGDHQ9UI17 866 aaKnown RBP16.52■□□□□ 0.24
SMARCA4-219ENST00000592604 CASZ1Q86V15 1759 aa16.52■□□□□ 0.23
SMARCA4-219ENST00000592604 CPP00450 1065 aa16.52■□□□□ 0.23
SMARCA4-219ENST00000592604 IRAK1P51617 712 aa16.52■□□□□ 0.23
SMARCA4-219ENST00000592604 TTC31Q49AM3 519 aaPredicted RBP16.52■□□□□ 0.23
SMARCA4-219ENST00000592604 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.52■□□□□ 0.23
SMARCA4-219ENST00000592604 SMCR8Q8TEV9 937 aaPredicted RBP16.52■□□□□ 0.23
SMARCA4-219ENST00000592604 HDAC7Q8WUI4 952 aa16.52■□□□□ 0.23
SMARCA4-219ENST00000592604 PLEKHA4Q9H4M7 779 aa16.52■□□□□ 0.23
SMARCA4-219ENST00000592604 GOLGA8KD6RF30 607 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 NKRFO15226 690 aaKnown RBP eCLIP16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 PJA2O43164 708 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 SF3B2Q13435 895 aaKnown RBP16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 ERFEQ4G0M1 354 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 C12orf60Q5U649 245 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 GBP6Q6ZN66 633 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 SND1Q7KZF4 910 aaKnown RBP eCLIP16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 PACS2Q86VP3 889 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 KIAA0895Q8NCT3 520 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 OSBPL9Q96SU4 736 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 FAM107BQ9H098 131 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 SEMA6BQ9H3T3 888 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 MCM9Q9NXL9 1143 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 MAST2Q6P0Q8 1798 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 ABCB11O95342 1321 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 EPB41P11171 864 aaKnown RBP16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 TNFRSF8P28908 595 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 KIF11P52732 1056 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 EZH2Q15910 746 aaKnown RBP16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 VWA3BQ502W6 1294 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 CLEC4GQ6UXB4 293 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 HEATR3Q7Z4Q2 680 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 ZMYND12Q9H0C1 365 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 ZNF652Q9Y2D9 606 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 HYOU1Q9Y4L1 999 aa16.51■□□□□ 0.23
SMARCA4-219ENST00000592604 LOC102724428A0A0B4J2F2 783 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 PALM3A6NDB9 673 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms