RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 SGPL1O95470 568 aa13.19□□□□□ -0.3
SMAD4-211ENST00000590499 COPB2P35606 906 aa13.19□□□□□ -0.3
SMAD4-211ENST00000590499 STAT2P52630 851 aa13.19□□□□□ -0.3
SMAD4-211ENST00000590499 OAZ1P54368 228 aa13.19□□□□□ -0.3
SMAD4-211ENST00000590499 CACNB2Q08289 660 aaPredicted RBP13.19□□□□□ -0.3
SMAD4-211ENST00000590499 KCTD1Q719H9 257 aa13.19□□□□□ -0.3
SMAD4-211ENST00000590499 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.19□□□□□ -0.3
SMAD4-211ENST00000590499 FAM160B2Q86V87 743 aa13.19□□□□□ -0.3
SMAD4-211ENST00000590499 DCAF4Q8WV16 495 aa13.19□□□□□ -0.3
SMAD4-211ENST00000590499 KIFC2Q96AC6 838 aa13.19□□□□□ -0.3
SMAD4-211ENST00000590499 RIPK3Q9Y572 518 aa13.19□□□□□ -0.3
SMAD4-211ENST00000590499 DNAH12Q6ZR08 3092 aa13.19□□□□□ -0.3
SMAD4-211ENST00000590499 CYP21A2P08686 494 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 SNHG28P0DPA3 235 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 FDX1P10109 184 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 PDHBP11177 359 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 FCER1AP12319 257 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 OLFML2BQ68BL8 750 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 SNRNP48Q6IEG0 339 aaKnown RBP13.18□□□□□ -0.3
SMAD4-211ENST00000590499 BTNL9Q6UXG8 535 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 DGKHQ86XP1 1220 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 CHURC1Q8WUH1 139 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 ANKS1AQ92625 1134 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 MAP4K1Q92918 833 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 CCDC136Q96JN2 1154 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 DEFB118Q96PH6 123 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 ZKSCAN3Q9BRR0 538 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 HMX1Q9NP08 348 aaPredicted RBP13.18□□□□□ -0.3
SMAD4-211ENST00000590499 TAF6LQ9Y6J9 622 aa13.18□□□□□ -0.3
SMAD4-211ENST00000590499 ZNF536O15090 1300 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 ZBED4O75132 1171 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 ADH1BP00325 375 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 CAPN2P17655 700 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 DPP9Q86TI2 863 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 ENAHQ8N8S7 591 aaPredicted RBP13.17□□□□□ -0.3
SMAD4-211ENST00000590499 CHMP4CQ96CF2 233 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 MMP19Q99542 508 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 ESYT1Q9BSJ8 1104 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 KRT23Q9C075 422 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 CNNM2Q9H8M5 875 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 RAVER2Q9HCJ3 691 aaKnown RBP13.17□□□□□ -0.3
SMAD4-211ENST00000590499 ZSWIM5Q9P217 1185 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 PRR12Q9ULL5 1215 aa13.17□□□□□ -0.3
SMAD4-211ENST00000590499 MCM3APO60318 1980 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 LCTP09848 1927 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 DDX11L8A8MPP1 907 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 CCND3P30281 292 aaPredicted RBP13.16□□□□□ -0.3
SMAD4-211ENST00000590499 ZNF792Q3KQV3 632 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 CCDC178Q5BJE1 867 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 MFSD14CQ5VZR4 134 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 TTBK2Q6IQ55 1244 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 STOX1Q6ZVD7 989 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 IQCA1Q86XH1 822 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 CPXCR1Q8N123 301 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 RDH13Q8NBN7 331 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 TRPV1Q8NER1 839 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 MAML3Q96JK9 1138 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 ZSCAN10Q96SZ4 725 aaPredicted RBP13.16□□□□□ -0.3
SMAD4-211ENST00000590499 LSG1Q9H089 658 aaKnown RBP13.16□□□□□ -0.3
SMAD4-211ENST00000590499 PKD2L1Q9P0L9 805 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 MTMR7Q9Y216 660 aa13.16□□□□□ -0.3
SMAD4-211ENST00000590499 TNKSO95271 1327 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 ALPK3Q96L96 1907 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 DNAJC25-GNG10A0A024R161 153 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 FARP2O94887 1054 aaPredicted RBP13.15□□□□□ -0.3
SMAD4-211ENST00000590499 NEFLP07196 543 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 PGK2P07205 417 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 CYBAP13498 195 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 CYP2C19P33261 490 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 ZNF543Q08ER8 600 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 KCTD2Q14681 263 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 SEC23AQ15436 765 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 CCDC96Q2M329 555 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 CYB5R4Q7L1T6 521 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 CHST13Q8NET6 341 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 RANBP17Q9H2T7 1088 aaKnown RBP13.15□□□□□ -0.3
SMAD4-211ENST00000590499 SLC5A4Q9NY91 659 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 DACH1Q9UI36 760 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 OGDHLQ9ULD0 1010 aa13.15□□□□□ -0.3
SMAD4-211ENST00000590499 ISY1Q9ULR0 285 aaKnown RBP13.15□□□□□ -0.3
SMAD4-211ENST00000590499 DIS3Q9Y2L1 958 aaKnown RBP13.15□□□□□ -0.3
SMAD4-211ENST00000590499 RBM8AQ9Y5S9 174 aaKnown RBP13.15□□□□□ -0.3
SMAD4-211ENST00000590499 FRMPD2Q68DX3 1309 aaPredicted RBP13.14□□□□□ -0.31
SMAD4-211ENST00000590499 SLC16A2P36021 539 aa13.14□□□□□ -0.31
SMAD4-211ENST00000590499 SNAP25P60880 206 aa13.14□□□□□ -0.31
SMAD4-211ENST00000590499 IKQ13123 557 aaPredicted RBP13.14□□□□□ -0.31
SMAD4-211ENST00000590499 SYDE2Q5VT97 1194 aa13.14□□□□□ -0.31
SMAD4-211ENST00000590499 CRIPAKQ8N1N5 446 aa13.14□□□□□ -0.31
SMAD4-211ENST00000590499 PNMA1Q8ND90 353 aa13.14□□□□□ -0.31
SMAD4-211ENST00000590499 FGD4Q96M96 766 aa13.14□□□□□ -0.31
SMAD4-211ENST00000590499 AGBL1Q96MI9 1066 aa13.14□□□□□ -0.31
SMAD4-211ENST00000590499 FBXO40Q9UH90 709 aa13.14□□□□□ -0.31
SMAD4-211ENST00000590499 CTDP1Q9Y5B0 961 aaPredicted RBP13.14□□□□□ -0.31
SMAD4-211ENST00000590499 RANBP2P49792 3224 aaKnown RBP13.14□□□□□ -0.31
SMAD4-211ENST00000590499 E7EWF7 191 aa13.13□□□□□ -0.31
SMAD4-211ENST00000590499 TFRCP02786 760 aaKnown RBP13.13□□□□□ -0.31
SMAD4-211ENST00000590499 TKFCQ3LXA3 575 aa13.13□□□□□ -0.31
SMAD4-211ENST00000590499 GPATCH4Q5T3I0 446 aaKnown RBP13.13□□□□□ -0.31
SMAD4-211ENST00000590499 DIS3LQ8TF46 1054 aaKnown RBP13.13□□□□□ -0.31
SMAD4-211ENST00000590499 UBAC1Q9BSL1 405 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms