RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 RCOR1Q9UKL0 485 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 RABGAP1Q9Y3P9 1069 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 RIPK3Q9Y572 518 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 MGAMO43451 1857 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 ELP1O95163 1332 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 PTMSP20962 102 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 TOB1P50616 345 aaPredicted RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 FAM110CQ1W6H9 321 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 NOM1Q5C9Z4 860 aaKnown RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 EARS2Q5JPH6 523 aaKnown RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 FAM160B2Q86V87 743 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 NOSTRINQ8IVI9 506 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 CD99L2Q8TCZ2 262 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 CHURC1Q8WUH1 139 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 RRP36Q96EU6 259 aaKnown RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 AGBL1Q96MI9 1066 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 MOV10L1Q9BXT6 1211 aaKnown RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 RANBP17Q9H2T7 1088 aaKnown RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 RAVER2Q9HCJ3 691 aaKnown RBP12□□□□□ -0.49
VPS4B-204ENST00000589604 RTEL1Q9NZ71 1219 aa12□□□□□ -0.49
VPS4B-204ENST00000589604 PLXNB2O15031 1838 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 FAM205CA6NFA0 338 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 XBP1P17861 261 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 NCLP19338 710 aaKnown RBP11.99□□□□□ -0.49
VPS4B-204ENST00000589604 NASPP49321 788 aaPredicted RBP11.99□□□□□ -0.49
VPS4B-204ENST00000589604 LACTBP83111 547 aaPredicted RBP11.99□□□□□ -0.49
VPS4B-204ENST00000589604 SP3Q02447 781 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 COL13A1Q5TAT6 717 aaPredicted RBP11.99□□□□□ -0.49
VPS4B-204ENST00000589604 CCDC174Q6PII3 467 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 CPXCR1Q8N123 301 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 FAM177A1Q8N128 213 aaPredicted RBP11.99□□□□□ -0.49
VPS4B-204ENST00000589604 GPRC5AQ8NFJ5 357 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 TRIM47Q96LD4 638 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 SCAND2PQ9GZW5 306 aaPredicted RBP11.99□□□□□ -0.49
VPS4B-204ENST00000589604 SPATC1LQ9H0A9 340 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 EFCC1Q9HA90 598 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 CLIC4Q9Y696 253 aa11.99□□□□□ -0.49
VPS4B-204ENST00000589604 DOCK3Q8IZD9 2030 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 PNMA6FA0A0J9YX94 578 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 FKTNO75072 461 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 KRT2P35908 639 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 CTCFP49711 727 aaPredicted RBP11.98□□□□□ -0.49
VPS4B-204ENST00000589604 SAFBQ15424 915 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS4B-204ENST00000589604 KLHL40Q2TBA0 621 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 HEATR3Q7Z4Q2 680 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 HOMER1Q86YM7 354 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 DAGLBQ8NCG7 672 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 PGBD1Q96JS3 809 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 ZNF396Q96N95 335 aaPredicted RBP11.98□□□□□ -0.49
VPS4B-204ENST00000589604 ZMYND12Q9H0C1 365 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 CFAP45Q9UL16 551 aa11.98□□□□□ -0.49
VPS4B-204ENST00000589604 ATP2A1O14983 1001 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 NLRP5P59047 1200 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 PLS1Q14651 629 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 PTPAQ15257 358 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 CDC37Q16543 378 aaPredicted RBP11.97□□□□□ -0.49
VPS4B-204ENST00000589604 QRICH1Q2TAL8 776 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 SKOR2Q2VWA4 1001 aaPredicted RBP11.97□□□□□ -0.49
VPS4B-204ENST00000589604 TNS4Q8IZW8 715 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 MB21D1Q8N884 522 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 LINC00301Q8NCQ3 95 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 SPATA32Q96LK8 384 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 POLR3EQ9NVU0 708 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 ESYT2A0FGR8 921 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 hCG_1984214I3L0E3 225 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 WNT7AO00755 349 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 ZBTB5O15062 677 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 ZBED4O75132 1171 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 ZMYND10O75800 440 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 ERCC3P19447 782 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 CALML3P27482 149 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 STAT3P40763 770 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 UBE2HP62256 183 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 CEBPZQ03701 1054 aaKnown RBP11.97□□□□□ -0.49
VPS4B-204ENST00000589604 MUM1L1Q5H9M0 696 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 ANO1Q5XXA6 986 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 SNRNP48Q6IEG0 339 aaKnown RBP11.97□□□□□ -0.49
VPS4B-204ENST00000589604 RIOX2Q8IUF8 465 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 BLIDQ8IZY5 108 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 ZNF713Q8N859 430 aaPredicted RBP11.97□□□□□ -0.49
VPS4B-204ENST00000589604 GTF3C2Q8WUA4 911 aaPredicted RBP11.97□□□□□ -0.49
VPS4B-204ENST00000589604 COA7Q96BR5 231 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 PCDHA4Q9UN74 947 aa11.97□□□□□ -0.49
VPS4B-204ENST00000589604 DDX49Q9Y6V7 483 aaKnown RBP11.97□□□□□ -0.49
VPS4B-204ENST00000589604 MYH7BA7E2Y1 1941 aa11.96□□□□□ -0.49
VPS4B-204ENST00000589604 YEATS4O95619 227 aa11.96□□□□□ -0.5
VPS4B-204ENST00000589604 ICAM1P05362 532 aa11.96□□□□□ -0.5
VPS4B-204ENST00000589604 PSMC4P43686 418 aa11.96□□□□□ -0.5
VPS4B-204ENST00000589604 GALNT17Q6IS24 598 aa11.96□□□□□ -0.5
VPS4B-204ENST00000589604 TEX13BQ9BXU2 312 aa11.96□□□□□ -0.5
VPS4B-204ENST00000589604 HOMER2Q9NSB8 354 aa11.96□□□□□ -0.5
VPS4B-204ENST00000589604 SEC63Q9UGP8 760 aaKnown RBP11.96□□□□□ -0.5
VPS4B-204ENST00000589604 PCDHA6Q9UN73 950 aa11.96□□□□□ -0.5
VPS4B-204ENST00000589604 GABRQQ9UN88 632 aa11.96□□□□□ -0.5
VPS4B-204ENST00000589604 PCDHA8Q9Y5H6 950 aa11.96□□□□□ -0.5
VPS4B-204ENST00000589604 OPLAHO14841 1288 aa11.95□□□□□ -0.5
VPS4B-204ENST00000589604 NAPAP54920 295 aa11.95□□□□□ -0.5
VPS4B-204ENST00000589604 GNL2Q13823 731 aaKnown RBP11.95□□□□□ -0.5
VPS4B-204ENST00000589604 SLC39A14Q15043 492 aa11.95□□□□□ -0.5
VPS4B-204ENST00000589604 SF3A1Q15459 793 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms