RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 MRPL38Q96DV4 380 aaKnown RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 RPGRIP1Q96KN7 1286 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 TGS1Q96RS0 853 aaKnown RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 TSEN34Q9BSV6 310 aaKnown RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 GTPBP4Q9BZE4 634 aaKnown RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 MFSD1Q9H3U5 465 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 TMEM134Q9H6X4 195 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 ZBTB40Q9NUA8 1239 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 CWC25Q9NXE8 425 aaPredicted RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 R3HCC1Q9Y3T6 440 aaKnown RBP4.93□□□□□ -1.62
LIG3-211ENST00000588713 ADGRG1Q9Y653 693 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 TNKSO95271 1327 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 CEP250Q9BV73 2442 aa4.93□□□□□ -1.62
LIG3-211ENST00000588713 DOCK1Q14185 1865 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 MYH15Q9Y2K3 1946 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 RCCD1A6NED2 376 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 EIF4E1BA6NMX2 242 aaKnown RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 LOC730098B7Z3J9 87 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 TAF4O00268 1085 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 ACTN4O43707 911 aaKnown RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 ADAMTS4O75173 837 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 CNMDO75829 334 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 LETM1O95202 739 aaPredicted RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 KIF20AO95235 890 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 S1PR4O95977 384 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 CFHP08603 1231 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 HIBADHP31937 336 aaKnown RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 KCNJ6P48051 423 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 ERVK-21P61565 698 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 ZNF200P98182 395 aaPredicted RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 TRIM28Q13263 835 aaKnown RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 PTPN21Q16825 1174 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 SOWAHCQ53LP3 525 aaPredicted RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 TAF3Q5VWG9 929 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 TBC1D9Q6ZT07 1266 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 GTF3C2Q8WUA4 911 aaPredicted RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 SYAP1Q96A49 352 aaPredicted RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 VWCEQ96DN2 955 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 C17orf80Q9BSJ5 609 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 NOC4LQ9BVI4 516 aaKnown RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 FTOQ9C0B1 505 aaKnown RBP eCLIP4.92□□□□□ -1.62
LIG3-211ENST00000588713 SEMA4AQ9H3S1 761 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 NSUN3Q9H649 340 aaKnown RBP4.92□□□□□ -1.62
LIG3-211ENST00000588713 IGFLR1Q9H665 355 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 LMBRD1Q9NUN5 540 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 NCDNQ9UBB6 729 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 CTNNA3Q9UI47 895 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 CD207Q9UJ71 328 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 COL4A3Q01955 1670 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 ELP1O95163 1332 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 SYNRGQ9UMZ2 1314 aa4.92□□□□□ -1.62
LIG3-211ENST00000588713 A0A1B0GUL6 1792 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 A0A1B0GUL7 405 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 LINC01553A4QN01 128 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 USP17L5A8MUK1 530 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 COBLO75128 1261 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 TBX10O75333 385 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 CD2BP2O95400 341 aaKnown RBP4.91□□□□□ -1.62
LIG3-211ENST00000588713 CD4P01730 458 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 IGHA2P01877 340 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 ASGR1P07306 291 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 PFKMP08237 780 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 C6orf222P0C671 652 aaPredicted RBP4.91□□□□□ -1.62
LIG3-211ENST00000588713 AKR1A1P14550 325 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 TAL1P17542 331 aaPredicted RBP4.91□□□□□ -1.62
LIG3-211ENST00000588713 SP100P23497 879 aaPredicted RBP4.91□□□□□ -1.62
LIG3-211ENST00000588713 HOXA7P31268 230 aaPredicted RBP4.91□□□□□ -1.62
LIG3-211ENST00000588713 LMNB2Q03252 620 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 SH3D19Q5HYK7 790 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 CAVIN1Q6NZI2 390 aaKnown RBP4.91□□□□□ -1.62
LIG3-211ENST00000588713 FAM117BQ6P1L5 589 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 ZNF598Q86UK7 904 aaKnown RBP4.91□□□□□ -1.62
LIG3-211ENST00000588713 VPS37DQ86XT2 251 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 TMEM57Q8N5G2 664 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 FAM184AQ8NB25 1140 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 CCDC191Q8NCU4 936 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 FLCNQ8NFG4 579 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 KCNV2Q8TDN2 545 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 SSH1Q8WYL5 1049 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 RIN2Q8WYP3 895 aaPredicted RBP4.91□□□□□ -1.62
LIG3-211ENST00000588713 ARHGAP45Q92619 1136 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 ZNF775Q96BV0 537 aaPredicted RBP4.91□□□□□ -1.62
LIG3-211ENST00000588713 TRPV6Q9H1D0 765 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 RBSNQ9H1K0 784 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 AS3MTQ9HBK9 375 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 INCENPQ9NQS7 918 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 USP40Q9NVE5 1235 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 FAM13BQ9NYF5 915 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 ANKFY1Q9P2R3 1169 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 USP18Q9UMW8 372 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 RABGAP1Q9Y3P9 1069 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 MAST3O60307 1309 aa4.91□□□□□ -1.62
LIG3-211ENST00000588713 DDTLA6NHG4 134 aaPredicted RBP4.9□□□□□ -1.63
LIG3-211ENST00000588713 PRR5-ARHGAP8B1AHC4 643 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 NR1I2O75469 434 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 DGAT1O75907 488 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 ARP10275 920 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 ICAM3P32942 547 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 MCM2P49736 904 aa4.9□□□□□ -1.63
LIG3-211ENST00000588713 NDUFV1P49821 464 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms