RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 CYP2C9P11712 490 aa25.84■■□□□ 1.73
SHMT1-210ENST00000583780 POU3F3P20264 500 aaPredicted RBP25.84■■□□□ 1.73
SHMT1-210ENST00000583780 NOVP48745 357 aa25.84■■□□□ 1.73
SHMT1-210ENST00000583780 NAPBQ9H115 298 aa25.84■■□□□ 1.73
SHMT1-210ENST00000583780 STX8Q9UNK0 236 aa25.84■■□□□ 1.73
SHMT1-210ENST00000583780 SLC3A2P08195 630 aaKnown RBP25.83■■□□□ 1.73
SHMT1-210ENST00000583780 ATP2A2P16615 1042 aaKnown RBP25.83■■□□□ 1.73
SHMT1-210ENST00000583780 TFF2Q03403 129 aa25.83■■□□□ 1.73
SHMT1-210ENST00000583780 ZMYM1Q5SVZ6 1142 aa25.83■■□□□ 1.73
SHMT1-210ENST00000583780 NSMFQ6X4W1 530 aa25.83■■□□□ 1.73
SHMT1-210ENST00000583780 GPATCH3Q96I76 525 aa25.83■■□□□ 1.73
SHMT1-210ENST00000583780 SCN10AQ9Y5Y9 1956 aa25.82■■□□□ 1.72
SHMT1-210ENST00000583780 RBM47A0AV96 593 aaKnown RBP25.82■■□□□ 1.72
SHMT1-210ENST00000583780 PURAQ00577 322 aaKnown RBP25.82■■□□□ 1.72
SHMT1-210ENST00000583780 BAATQ14032 418 aaPredicted RBP25.82■■□□□ 1.72
SHMT1-210ENST00000583780 TTBK2Q6IQ55 1244 aa25.82■■□□□ 1.72
SHMT1-210ENST00000583780 RCAN3Q9UKA8 241 aa25.82■■□□□ 1.72
SHMT1-210ENST00000583780 CCPG1Q9ULG6 757 aa25.82■■□□□ 1.72
SHMT1-210ENST00000583780 TRIP12Q14669 1992 aaPredicted RBP25.82■■□□□ 1.72
SHMT1-210ENST00000583780 ZBBXA8MT70 800 aa25.81■■□□□ 1.72
SHMT1-210ENST00000583780 ICAM1P05362 532 aa25.81■■□□□ 1.72
SHMT1-210ENST00000583780 CTDSPL2Q05D32 466 aa25.81■■□□□ 1.72
SHMT1-210ENST00000583780 PI4K2BQ8TCG2 481 aa25.81■■□□□ 1.72
SHMT1-210ENST00000583780 WDR11Q9BZH6 1224 aa25.81■■□□□ 1.72
SHMT1-210ENST00000583780 RANBP17Q9H2T7 1088 aaKnown RBP25.81■■□□□ 1.72
SHMT1-210ENST00000583780 MTCH2Q9Y6C9 303 aa25.81■■□□□ 1.72
SHMT1-210ENST00000583780 TNKSO95271 1327 aa25.81■■□□□ 1.72
SHMT1-210ENST00000583780 PFKMP08237 780 aa25.8■■□□□ 1.72
SHMT1-210ENST00000583780 SUPT20HL2P0C7V6 817 aa25.8■■□□□ 1.72
SHMT1-210ENST00000583780 ALDH5A1P51649 535 aaPredicted RBP25.8■■□□□ 1.72
SHMT1-210ENST00000583780 LRRFIP1Q32MZ4 808 aaKnown RBP25.8■■□□□ 1.72
SHMT1-210ENST00000583780 DEFB128Q7Z7B8 93 aa25.8■■□□□ 1.72
SHMT1-210ENST00000583780 MICALL1Q8N3F8 863 aa25.8■■□□□ 1.72
SHMT1-210ENST00000583780 TSPYL2Q9H2G4 693 aaPredicted RBP25.8■■□□□ 1.72
SHMT1-210ENST00000583780 POLR3EQ9NVU0 708 aa25.8■■□□□ 1.72
SHMT1-210ENST00000583780 TSPY2A6NKD2 308 aa25.79■■□□□ 1.72
SHMT1-210ENST00000583780 CA3P07451 260 aa25.79■■□□□ 1.72
SHMT1-210ENST00000583780 KCNQ1P51787 676 aa25.79■■□□□ 1.72
SHMT1-210ENST00000583780 TMEM67Q5HYA8 995 aa25.79■■□□□ 1.72
SHMT1-210ENST00000583780 PPP4R3BQ5MIZ7 849 aa25.79■■□□□ 1.72
SHMT1-210ENST00000583780 BTNL9Q6UXG8 535 aa25.79■■□□□ 1.72
SHMT1-210ENST00000583780 EPOPA6NHQ4 379 aa25.78■■□□□ 1.72
SHMT1-210ENST00000583780 NFIBO00712 420 aa25.78■■□□□ 1.72
SHMT1-210ENST00000583780 SLC16A2P36021 539 aa25.78■■□□□ 1.72
SHMT1-210ENST00000583780 IL27Q8NEV9 243 aa25.78■■□□□ 1.72
SHMT1-210ENST00000583780 OTUD7AQ8TE49 926 aaPredicted RBP25.78■■□□□ 1.72
SHMT1-210ENST00000583780 PPP1R13LQ8WUF5 828 aa25.78■■□□□ 1.72
SHMT1-210ENST00000583780 CERS4Q9HA82 394 aa25.78■■□□□ 1.72
SHMT1-210ENST00000583780 ADD3Q9UEY8 706 aaKnown RBP25.78■■□□□ 1.72
SHMT1-210ENST00000583780 MTMR7Q9Y216 660 aa25.78■■□□□ 1.72
SHMT1-210ENST00000583780 TTC41PQ6P2S7 1318 aa25.78■■□□□ 1.72
SHMT1-210ENST00000583780 ERC2O15083 957 aa25.77■■□□□ 1.72
SHMT1-210ENST00000583780 ARHGEF15O94989 841 aa25.77■■□□□ 1.72
SHMT1-210ENST00000583780 MYL3P08590 195 aa25.77■■□□□ 1.72
SHMT1-210ENST00000583780 FGRP09769 529 aa25.77■■□□□ 1.72
SHMT1-210ENST00000583780 NBPF20Q3BBV1 942 aa25.77■■□□□ 1.72
SHMT1-210ENST00000583780 CLEC4DQ8WXI8 215 aa25.77■■□□□ 1.72
SHMT1-210ENST00000583780 LOC102724159A0A0B4J2E5 919 aa25.76■■□□□ 1.71
SHMT1-210ENST00000583780 PWP2Q15269 919 aaKnown RBP25.76■■□□□ 1.71
SHMT1-210ENST00000583780 KRT40Q6A162 431 aa25.76■■□□□ 1.71
SHMT1-210ENST00000583780 DCAF4Q8WV16 495 aa25.76■■□□□ 1.71
SHMT1-210ENST00000583780 MTG1Q9BT17 334 aaPredicted RBP25.76■■□□□ 1.71
SHMT1-210ENST00000583780 FSD1Q9BTV5 496 aa25.76■■□□□ 1.71
SHMT1-210ENST00000583780 ANAPC4Q9UJX5 808 aa25.76■■□□□ 1.71
SHMT1-210ENST00000583780 RANBP6O60518 1105 aaKnown RBP25.75■■□□□ 1.71
SHMT1-210ENST00000583780 IQCF3P0C7M6 154 aa25.75■■□□□ 1.71
SHMT1-210ENST00000583780 CPT1AP50416 773 aa25.75■■□□□ 1.71
SHMT1-210ENST00000583780 PHOSPHO2Q8TCD6 241 aa25.75■■□□□ 1.71
SHMT1-210ENST00000583780 PTPRSQ13332 1948 aa25.75■■□□□ 1.71
SHMT1-210ENST00000583780 PLA2G5P39877 138 aa25.74■■□□□ 1.71
SHMT1-210ENST00000583780 TAP1Q03518 808 aa25.74■■□□□ 1.71
SHMT1-210ENST00000583780 AAK1Q2M2I8 961 aa25.74■■□□□ 1.71
SHMT1-210ENST00000583780 VPS53Q5VIR6 699 aa25.74■■□□□ 1.71
SHMT1-210ENST00000583780 OR6J1Q8NGC5 347 aa25.74■■□□□ 1.71
SHMT1-210ENST00000583780 A6NJR5 290 aa25.73■■□□□ 1.71
SHMT1-210ENST00000583780 ORC4O43929 436 aa25.73■■□□□ 1.71
SHMT1-210ENST00000583780 RFC2P35250 354 aa25.73■■□□□ 1.71
SHMT1-210ENST00000583780 CCDC96Q2M329 555 aa25.73■■□□□ 1.71
SHMT1-210ENST00000583780 SYDE2Q5VT97 1194 aa25.73■■□□□ 1.71
SHMT1-210ENST00000583780 NFRKBQ6P4R8 1299 aa25.73■■□□□ 1.71
SHMT1-210ENST00000583780 SLC30A10Q6XR72 485 aa25.73■■□□□ 1.71
SHMT1-210ENST00000583780 COPS5Q92905 334 aa25.73■■□□□ 1.71
SHMT1-210ENST00000583780 SLC9A7Q96T83 725 aa25.73■■□□□ 1.71
SHMT1-210ENST00000583780 TMEM47Q9BQJ4 181 aa25.73■■□□□ 1.71
SHMT1-210ENST00000583780 GPHNQ9NQX3 736 aaPredicted RBP25.73■■□□□ 1.71
SHMT1-210ENST00000583780 PTPDC1A2A3K4 754 aa25.72■■□□□ 1.71
SHMT1-210ENST00000583780 PITPNM1O00562 1244 aa25.72■■□□□ 1.71
SHMT1-210ENST00000583780 TLL1O43897 1013 aa25.72■■□□□ 1.71
SHMT1-210ENST00000583780 ACTN1P12814 892 aa25.72■■□□□ 1.71
SHMT1-210ENST00000583780 EDNRBP24530 442 aa25.72■■□□□ 1.71
SHMT1-210ENST00000583780 SKIV2LQ15477 1246 aaKnown RBP25.72■■□□□ 1.71
SHMT1-210ENST00000583780 GTPBP6O43824 516 aaPredicted RBP25.71■■□□□ 1.71
SHMT1-210ENST00000583780 CALML3P27482 149 aa25.71■■□□□ 1.71
SHMT1-210ENST00000583780 GPNMBQ14956 572 aa25.71■■□□□ 1.71
SHMT1-210ENST00000583780 FAM47CQ5HY64 1035 aa25.71■■□□□ 1.71
SHMT1-210ENST00000583780 RNF207Q6ZRF8 634 aa25.71■■□□□ 1.71
SHMT1-210ENST00000583780 SPRED2Q7Z698 418 aa25.71■■□□□ 1.71
SHMT1-210ENST00000583780 HERC6Q8IVU3 1022 aa25.71■■□□□ 1.71
SHMT1-210ENST00000583780 C1QTNF1Q9BXJ1 281 aa25.71■■□□□ 1.71
SHMT1-210ENST00000583780 EPHX3Q9H6B9 360 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms