RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 PDHXO00330 501 aa17.41■□□□□ 0.38
SS18-206ENST00000577572 FIBPO43427 364 aa17.41■□□□□ 0.38
SS18-206ENST00000577572 ALAS1P13196 640 aa17.41■□□□□ 0.38
SS18-206ENST00000577572 SREBF2Q12772 1141 aa17.41■□□□□ 0.38
SS18-206ENST00000577572 SF3A1Q15459 793 aaKnown RBP17.41■□□□□ 0.38
SS18-206ENST00000577572 FOXD4L6Q3SYB3 417 aaPredicted RBP17.41■□□□□ 0.38
SS18-206ENST00000577572 JAKMIP3Q5VZ66 844 aa17.41■□□□□ 0.38
SS18-206ENST00000577572 SNRNP48Q6IEG0 339 aaKnown RBP17.41■□□□□ 0.38
SS18-206ENST00000577572 SAMD1Q6SPF0 538 aaPredicted RBP17.41■□□□□ 0.38
SS18-206ENST00000577572 FOXD4L3Q6VB84 417 aaPredicted RBP17.41■□□□□ 0.38
SS18-206ENST00000577572 SHCBP1Q8NEM2 672 aa17.41■□□□□ 0.38
SS18-206ENST00000577572 TRERF1Q96PN7 1200 aa17.41■□□□□ 0.38
SS18-206ENST00000577572 ACAD9Q9H845 621 aa17.41■□□□□ 0.38
SS18-206ENST00000577572 LMBRD1Q9NUN5 540 aa17.41■□□□□ 0.38
SS18-206ENST00000577572 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.41■□□□□ 0.38
SS18-206ENST00000577572 PARP14Q460N5 1801 aa17.41■□□□□ 0.38
SS18-206ENST00000577572 CYP3A7-CYP3A51PA0A087WV96 503 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 SPTLC2O15270 562 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 PRPF40AO75400 957 aaKnown RBP17.4■□□□□ 0.38
SS18-206ENST00000577572 MBD3O95983 291 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 CYP3A4P08684 503 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 CYP3A7P24462 503 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 SREBF1P36956 1147 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 PTPAQ15257 358 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 EARS2Q5JPH6 523 aaKnown RBP17.4■□□□□ 0.38
SS18-206ENST00000577572 ARL6IP4Q66PJ3 421 aaKnown RBP17.4■□□□□ 0.38
SS18-206ENST00000577572 USP17L6PQ6QN14 398 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 RASGRP4Q8TDF6 673 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 TBCKQ8TEA7 893 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 SPATC1LQ9H0A9 340 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 CREBZFQ9NS37 354 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 RNF146Q9NTX7 359 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 ABT1Q9ULW3 272 aaKnown RBP17.4■□□□□ 0.38
SS18-206ENST00000577572 CLIC4Q9Y696 253 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 A0A0G2JMZ2 1700 aa17.4■□□□□ 0.38
SS18-206ENST00000577572 A0A1W2PQ27 194 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 A0A1W2PQ64 194 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 A0A1W2PQD8 194 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 GOLGA6L4A6NEF3 574 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 CFBP00751 764 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 CCNA1P78396 465 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 INF2Q27J81 1249 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 XRRA1Q6P2D8 792 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 CRYGNQ8WXF5 182 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 FERMT2Q96AC1 680 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 ANO3Q9BYT9 981 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 MROH8Q9H579 483 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 MORF4L1Q9UBU8 362 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 PCDHB6Q9Y5E3 794 aa17.39■□□□□ 0.37
SS18-206ENST00000577572 FAM155AB1AL88 458 aaPredicted RBP17.38■□□□□ 0.37
SS18-206ENST00000577572 ADAMTS3O15072 1205 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 CIITAP33076 1130 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 PRPHP41219 470 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 ATP2C1P98194 919 aaPredicted RBP17.38■□□□□ 0.37
SS18-206ENST00000577572 UBE2SQ16763 222 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 ADALQ6DHV7 355 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 RNF207Q6ZRF8 634 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 ZNF579Q8NAF0 562 aaKnown RBP17.38■□□□□ 0.37
SS18-206ENST00000577572 SMCR8Q8TEV9 937 aaPredicted RBP17.38■□□□□ 0.37
SS18-206ENST00000577572 MBOAT7Q96N66 472 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 TMEM260Q9NX78 707 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 BTBD7Q9P203 1132 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 RBPJLQ9UBG7 517 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 PFASO15067 1338 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 FRMPD4Q14CM0 1322 aa17.38■□□□□ 0.37
SS18-206ENST00000577572 FAM205CA6NFA0 338 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 RASSF10A6NK89 507 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 NFIBO00712 420 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 CNMDO75829 334 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 PTPREP23469 700 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 TM4SF4P48230 202 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 APLP1P51693 650 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 NOGQ13253 232 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 KRI1Q8N9T8 703 aaKnown RBP17.37■□□□□ 0.37
SS18-206ENST00000577572 GPRC5AQ8NFJ5 357 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 RIPK3Q9Y572 518 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 SRPRBQ9Y5M8 271 aaKnown RBP17.37■□□□□ 0.37
SS18-206ENST00000577572 MYH15Q9Y2K3 1946 aa17.37■□□□□ 0.37
SS18-206ENST00000577572 LOC102724159A0A0B4J2E5 919 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 CUTAO60888 179 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 ALDH1A1P00352 501 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 ME1P48163 572 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 RPS6P62753 249 aaKnown RBP17.36■□□□□ 0.37
SS18-206ENST00000577572 ERVK-9P63128 1117 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 ERVK-24P63145 666 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 ARHGAP4P98171 946 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 CEBPZQ03701 1054 aaKnown RBP17.36■□□□□ 0.37
SS18-206ENST00000577572 PLS1Q14651 629 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 PWP2Q15269 919 aaKnown RBP17.36■□□□□ 0.37
SS18-206ENST00000577572 KLHL40Q2TBA0 621 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 LETM2Q2VYF4 491 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 NOM1Q5C9Z4 860 aaKnown RBP17.36■□□□□ 0.37
SS18-206ENST00000577572 MUM1L1Q5H9M0 696 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 POTEEQ6S8J3 1075 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 FAM43AQ8N2R8 423 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 SYTL5Q8TDW5 730 aaPredicted RBP17.36■□□□□ 0.37
SS18-206ENST00000577572 CHAMP1Q96JM3 812 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 PTPN18Q99952 460 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 MOV10L1Q9BXT6 1211 aaKnown RBP17.36■□□□□ 0.37
SS18-206ENST00000577572 GDPD2Q9HCC8 539 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms