RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 ADCY3O60266 1144 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 FAM200BP0CF97 657 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 POTEJP0CG39 1038 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 GSTT1P30711 240 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 RENBPP51606 427 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 PSMA6P60900 246 aaKnown RBP8.07□□□□□ -1.12
VPS53-217ENST00000575100 PPP4R3BQ5MIZ7 849 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 JAKMIP3Q5VZ66 844 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 RNF219Q5W0B1 726 aaPredicted RBP8.07□□□□□ -1.12
VPS53-217ENST00000575100 MZT2AQ6P582 158 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 BICDL1Q6ZP65 573 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 DDX46Q7L014 1031 aaKnown RBP8.07□□□□□ -1.12
VPS53-217ENST00000575100 RASSF3Q86WH2 238 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 SYNE4Q8N205 404 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 OR6P1Q8NGX9 317 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 CNKSR1Q969H4 720 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 ZNF622Q969S3 477 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS53-217ENST00000575100 ISCA1Q9BUE6 129 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 TAOK3Q9H2K8 898 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 FOXD3Q9UJU5 478 aaPredicted RBP8.07□□□□□ -1.12
VPS53-217ENST00000575100 DGKBQ9Y6T7 804 aa8.07□□□□□ -1.12
VPS53-217ENST00000575100 UTYO14607 1347 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 PNMA6EA0A0J9YXQ4 647 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 GRM8O00222 908 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 ACTN4O43707 911 aaKnown RBP8.06□□□□□ -1.12
VPS53-217ENST00000575100 NEXNQ0ZGT2 675 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 SAFBQ15424 915 aaKnown RBP eCLIP8.06□□□□□ -1.12
VPS53-217ENST00000575100 C11orf91Q3C1V1 193 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 FAM133BQ5BKY9 247 aaKnown RBP8.06□□□□□ -1.12
VPS53-217ENST00000575100 EPHA10Q5JZY3 1008 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 CEP85Q6P2H3 762 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 THAP11Q96EK4 314 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 CNNM2Q9H8M5 875 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 FBRSQ9HAH7 460 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 SERTAD1Q9UHV2 236 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 ERVV-1B6SEH8 477 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 UBTFL1P0CB47 393 aaPredicted RBP8.06□□□□□ -1.12
VPS53-217ENST00000575100 CHAF1AQ13111 956 aaPredicted RBP8.06□□□□□ -1.12
VPS53-217ENST00000575100 GBX1Q14549 363 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 COBLL1Q53SF7 1204 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 UBE3BQ7Z3V4 1068 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 NLRP10Q86W26 655 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 KIAA1958Q8N8K9 716 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 CNBD1Q8NA66 436 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 GOLM1Q8NBJ4 401 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 KHSRPQ92945 711 aaKnown RBP eCLIP8.06□□□□□ -1.12
VPS53-217ENST00000575100 MASTLQ96GX5 879 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 SUCLG2Q96I99 432 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.06□□□□□ -1.12
VPS53-217ENST00000575100 ZFATQ9P243 1243 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 MAP4K5Q9Y4K4 846 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 SPEF1Q9Y4P9 236 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 NUP98P52948 1817 aa8.06□□□□□ -1.12
VPS53-217ENST00000575100 TNKSO95271 1327 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 PASKQ96RG2 1323 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 B2RBV5 119 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 GNAI2P04899 355 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 ST5P78524 1137 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 DGKZQ13574 1117 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 MRM1Q6IN84 353 aaKnown RBP8.05□□□□□ -1.12
VPS53-217ENST00000575100 C3orf67Q6ZVT6 689 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 LRRTM3Q86VH5 581 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 TPH2Q8IWU9 490 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 ZNF34Q8IZ26 560 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 NKAPQ8N5F7 415 aaKnown RBP8.05□□□□□ -1.12
VPS53-217ENST00000575100 C7orf43Q8WVR3 580 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 PGBD4Q96DM1 585 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 KIF2CQ99661 725 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 RUSC1Q9BVN2 902 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 PUS7LQ9H0K6 701 aaKnown RBP8.05□□□□□ -1.12
VPS53-217ENST00000575100 NCOA5Q9HCD5 579 aaKnown RBP8.05□□□□□ -1.12
VPS53-217ENST00000575100 OSGEPQ9NPF4 335 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 TRHDEQ9UKU6 1024 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 GJA3Q9Y6H8 435 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 ANKRD36CQ5JPF3 1778 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 CNTNAP1P78357 1384 aa8.05□□□□□ -1.12
VPS53-217ENST00000575100 FAM177BA6PVY3 158 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 H7C1W4 665 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 PF4P02776 101 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 RPLP1P05386 114 aaKnown RBP8.04□□□□□ -1.12
VPS53-217ENST00000575100 GNAI3P08754 354 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 STK3Q13188 491 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 TRIM28Q13263 835 aaKnown RBP8.04□□□□□ -1.12
VPS53-217ENST00000575100 BIRC3Q13489 604 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 CTC1Q2NKJ3 1217 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 CCDC92Q53HC0 331 aaPredicted RBP8.04□□□□□ -1.12
VPS53-217ENST00000575100 ARMC3Q5W041 872 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 ANKRD44Q8N8A2 993 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 CCDC191Q8NCU4 936 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 RSPH1Q8WYR4 309 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 IFT43Q96FT9 208 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 FAM89AQ96GI7 184 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 ESYT1Q9BSJ8 1104 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 BICC1Q9H694 974 aaKnown RBP8.04□□□□□ -1.12
VPS53-217ENST00000575100 RIC8AQ9NPQ8 531 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 TLR6Q9Y2C9 796 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 THSD7BQ9C0I4 1608 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 SNED1Q8TER0 1413 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 IQCA1LA6NCM1 817 aa8.04□□□□□ -1.12
VPS53-217ENST00000575100 SNX2O60749 519 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms