RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 IQSEC1Q6DN90 963 aa22.74■■□□□ 1.23
NUP88-203ENST00000572019 KIAA1211Q6ZU35 1233 aa22.74■■□□□ 1.23
NUP88-203ENST00000572019 MORC4Q8TE76 937 aa22.74■■□□□ 1.23
NUP88-203ENST00000572019 FSD1Q9BTV5 496 aa22.74■■□□□ 1.23
NUP88-203ENST00000572019 NACAP1Q9BZK3 213 aa22.74■■□□□ 1.23
NUP88-203ENST00000572019 ALDH8A1Q9H2A2 487 aaPredicted RBP22.74■■□□□ 1.23
NUP88-203ENST00000572019 XIRP2A4UGR9 3374 aa22.74■■□□□ 1.23
NUP88-203ENST00000572019 BDP1A6H8Y1 2624 aa22.73■■□□□ 1.23
NUP88-203ENST00000572019 TFF2Q03403 129 aa22.73■■□□□ 1.23
NUP88-203ENST00000572019 BAATQ14032 418 aaPredicted RBP22.73■■□□□ 1.23
NUP88-203ENST00000572019 TSPY2A6NKD2 308 aa22.72■■□□□ 1.23
NUP88-203ENST00000572019 ARHGEF15O94989 841 aa22.72■■□□□ 1.23
NUP88-203ENST00000572019 NOVP48745 357 aa22.72■■□□□ 1.23
NUP88-203ENST00000572019 MRPS5P82675 430 aaKnown RBP22.72■■□□□ 1.23
NUP88-203ENST00000572019 PPP2R2DQ66LE6 453 aa22.72■■□□□ 1.23
NUP88-203ENST00000572019 MICALL1Q8N3F8 863 aa22.72■■□□□ 1.23
NUP88-203ENST00000572019 UHRF1Q96T88 793 aaPredicted RBP22.72■■□□□ 1.23
NUP88-203ENST00000572019 VTA1Q9NP79 307 aa22.72■■□□□ 1.23
NUP88-203ENST00000572019 Q9Y3F1 56 aa22.72■■□□□ 1.23
NUP88-203ENST00000572019 SLC4A7Q9Y6M7 1214 aa22.72■■□□□ 1.23
NUP88-203ENST00000572019 TRANK1O15050 2925 aa22.72■■□□□ 1.23
NUP88-203ENST00000572019 EPOPA6NHQ4 379 aa22.71■■□□□ 1.23
NUP88-203ENST00000572019 ZBBXA8MT70 800 aa22.71■■□□□ 1.23
NUP88-203ENST00000572019 ICAM1P05362 532 aa22.71■■□□□ 1.23
NUP88-203ENST00000572019 ALDH5A1P51649 535 aaPredicted RBP22.71■■□□□ 1.23
NUP88-203ENST00000572019 CCDC96Q2M329 555 aa22.71■■□□□ 1.23
NUP88-203ENST00000572019 DUSP28Q4G0W2 176 aa22.71■■□□□ 1.23
NUP88-203ENST00000572019 SLC30A10Q6XR72 485 aa22.71■■□□□ 1.23
NUP88-203ENST00000572019 DEFB128Q7Z7B8 93 aa22.71■■□□□ 1.23
NUP88-203ENST00000572019 MTIF3Q9H2K0 278 aaKnown RBP22.71■■□□□ 1.23
NUP88-203ENST00000572019 RANBP17Q9H2T7 1088 aaKnown RBP22.71■■□□□ 1.23
NUP88-203ENST00000572019 PCDHB15Q9Y5E8 787 aa22.71■■□□□ 1.23
NUP88-203ENST00000572019 FRMPD2Q68DX3 1309 aaPredicted RBP22.71■■□□□ 1.23
NUP88-203ENST00000572019 TTC41PQ6P2S7 1318 aa22.71■■□□□ 1.23
NUP88-203ENST00000572019 ZEB2O60315 1214 aa22.7■■□□□ 1.22
NUP88-203ENST00000572019 SLC3A2P08195 630 aaKnown RBP22.7■■□□□ 1.22
NUP88-203ENST00000572019 PURAQ00577 322 aaKnown RBP22.7■■□□□ 1.22
NUP88-203ENST00000572019 KRT40Q6A162 431 aa22.7■■□□□ 1.22
NUP88-203ENST00000572019 WDR11Q9BZH6 1224 aa22.7■■□□□ 1.22
NUP88-203ENST00000572019 CERS4Q9HA82 394 aa22.7■■□□□ 1.22
NUP88-203ENST00000572019 TNKSO95271 1327 aa22.7■■□□□ 1.22
NUP88-203ENST00000572019 RANBP6O60518 1105 aaKnown RBP22.69■■□□□ 1.22
NUP88-203ENST00000572019 ATP2A2P16615 1042 aaKnown RBP22.69■■□□□ 1.22
NUP88-203ENST00000572019 SPRED2Q7Z698 418 aa22.69■■□□□ 1.22
NUP88-203ENST00000572019 CLEC4DQ8WXI8 215 aa22.69■■□□□ 1.22
NUP88-203ENST00000572019 COPS5Q92905 334 aa22.69■■□□□ 1.22
NUP88-203ENST00000572019 PCDHA11Q9Y5I1 949 aa22.69■■□□□ 1.22
NUP88-203ENST00000572019 COL4A4P53420 1690 aaPredicted RBP22.68■■□□□ 1.22
NUP88-203ENST00000572019 SALL3Q9BXA9 1300 aa22.68■■□□□ 1.22
NUP88-203ENST00000572019 CA3P07451 260 aa22.68■■□□□ 1.22
NUP88-203ENST00000572019 MYL3P08590 195 aa22.68■■□□□ 1.22
NUP88-203ENST00000572019 BMP1P13497 986 aa22.68■■□□□ 1.22
NUP88-203ENST00000572019 KCNQ1P51787 676 aa22.68■■□□□ 1.22
NUP88-203ENST00000572019 GPCPD1Q9NPB8 672 aa22.68■■□□□ 1.22
NUP88-203ENST00000572019 RBM47A0AV96 593 aaKnown RBP22.67■■□□□ 1.22
NUP88-203ENST00000572019 SYDE2Q5VT97 1194 aa22.67■■□□□ 1.22
NUP88-203ENST00000572019 BTNL9Q6UXG8 535 aa22.67■■□□□ 1.22
NUP88-203ENST00000572019 RPUSD2Q8IZ73 545 aaKnown RBP22.67■■□□□ 1.22
NUP88-203ENST00000572019 ANAPC4Q9UJX5 808 aa22.67■■□□□ 1.22
NUP88-203ENST00000572019 PTPDC1A2A3K4 754 aa22.66■■□□□ 1.22
NUP88-203ENST00000572019 CALML3P27482 149 aa22.66■■□□□ 1.22
NUP88-203ENST00000572019 LRRFIP1Q32MZ4 808 aaKnown RBP22.66■■□□□ 1.22
NUP88-203ENST00000572019 NBPF20Q3BBV1 942 aa22.66■■□□□ 1.22
NUP88-203ENST00000572019 OR6J1Q8NGC5 347 aa22.66■■□□□ 1.22
NUP88-203ENST00000572019 DCAF4Q8WV16 495 aa22.66■■□□□ 1.22
NUP88-203ENST00000572019 TMEM47Q9BQJ4 181 aa22.66■■□□□ 1.22
NUP88-203ENST00000572019 BRWD1Q9NSI6 2320 aa22.65■■□□□ 1.22
NUP88-203ENST00000572019 ERC2O15083 957 aa22.65■■□□□ 1.22
NUP88-203ENST00000572019 ORC4O43929 436 aa22.65■■□□□ 1.22
NUP88-203ENST00000572019 FGRP09769 529 aa22.65■■□□□ 1.22
NUP88-203ENST00000572019 MX1P20591 662 aa22.65■■□□□ 1.22
NUP88-203ENST00000572019 SEZ6LQ9BYH1 1024 aa22.65■■□□□ 1.22
NUP88-203ENST00000572019 MTCH2Q9Y6C9 303 aa22.65■■□□□ 1.22
NUP88-203ENST00000572019 ARIH2O95376 493 aa22.64■■□□□ 1.21
NUP88-203ENST00000572019 FAM47CQ5HY64 1035 aa22.64■■□□□ 1.21
NUP88-203ENST00000572019 RRP12Q5JTH9 1297 aaKnown RBP22.64■■□□□ 1.21
NUP88-203ENST00000572019 MTG1Q9BT17 334 aaPredicted RBP22.64■■□□□ 1.21
NUP88-203ENST00000572019 POLR3EQ9NVU0 708 aa22.64■■□□□ 1.21
NUP88-203ENST00000572019 KIAA1217Q5T5P2 1943 aa22.63■■□□□ 1.21
NUP88-203ENST00000572019 TMEM67Q5HYA8 995 aa22.63■■□□□ 1.21
NUP88-203ENST00000572019 FAM227BQ96M60 508 aa22.63■■□□□ 1.21
NUP88-203ENST00000572019 CPVLQ9H3G5 476 aa22.63■■□□□ 1.21
NUP88-203ENST00000572019 ADD3Q9UEY8 706 aaKnown RBP22.63■■□□□ 1.21
NUP88-203ENST00000572019 IQCF3P0C7M6 154 aa22.62■■□□□ 1.21
NUP88-203ENST00000572019 PDHBP11177 359 aa22.62■■□□□ 1.21
NUP88-203ENST00000572019 EDNRBP24530 442 aa22.62■■□□□ 1.21
NUP88-203ENST00000572019 RPS6P62753 249 aaKnown RBP22.62■■□□□ 1.21
NUP88-203ENST00000572019 PPP4R3BQ5MIZ7 849 aa22.62■■□□□ 1.21
NUP88-203ENST00000572019 TMCO2Q7Z6W1 182 aaPredicted RBP22.62■■□□□ 1.21
NUP88-203ENST00000572019 CTAGE1Q96RT6 745 aa22.62■■□□□ 1.21
NUP88-203ENST00000572019 MYH6P13533 1939 aa22.62■■□□□ 1.21
NUP88-203ENST00000572019 A0A0D9SFI3 127 aa22.61■■□□□ 1.21
NUP88-203ENST00000572019 SUPT20HL2P0C7V6 817 aa22.61■■□□□ 1.21
NUP88-203ENST00000572019 TOP1P11387 765 aaKnown RBP22.61■■□□□ 1.21
NUP88-203ENST00000572019 CPT1AP50416 773 aa22.61■■□□□ 1.21
NUP88-203ENST00000572019 TAP1Q03518 808 aa22.61■■□□□ 1.21
NUP88-203ENST00000572019 GPNMBQ14956 572 aa22.61■■□□□ 1.21
NUP88-203ENST00000572019 SKIV2LQ15477 1246 aaKnown RBP22.61■■□□□ 1.21
NUP88-203ENST00000572019 RNF207Q6ZRF8 634 aa22.61■■□□□ 1.21
NUP88-203ENST00000572019 TOMM22Q9NS69 142 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms