RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 H7C1D1 291 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 KLRC4O43908 158 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 TRIM21P19474 475 aaKnown RBP9.8□□□□□ -0.84
LINC00558-201ENST00000569422 SPAG1Q07617 926 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 NFIAQ12857 509 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 LRRC41Q15345 812 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 CALCRLQ16602 461 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 SLF2Q8IX21 1173 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 KRT222Q8N1A0 295 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 KIFC2Q96AC6 838 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 CALML4Q96GE6 196 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 SPZ1Q9BXG8 430 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 QTRT2Q9H974 415 aaKnown RBP9.8□□□□□ -0.84
LINC00558-201ENST00000569422 MTMR4Q9NYA4 1195 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 ENC1O14682 589 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 POLR3GO15318 223 aaPredicted RBP9.8□□□□□ -0.84
LINC00558-201ENST00000569422 TUBB4AP04350 444 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 MAP3K9P80192 1104 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 TSR1Q2NL82 804 aaKnown RBP9.8□□□□□ -0.84
LINC00558-201ENST00000569422 CRY2Q49AN0 593 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 ANKRD40Q6AI12 368 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 ZFPM1Q8IX07 1006 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 LZTS2Q9BRK4 669 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 TBC1D7Q9P0N9 293 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 UTRNP46939 3433 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 SCN7AQ01118 1682 aa9.8□□□□□ -0.84
LINC00558-201ENST00000569422 CACNB1Q02641 598 aaPredicted RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 TBC1D8BQ0IIM8 1120 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 NBPF9Q3BBW0 867 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 MB21D1Q8N884 522 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 CCDC47Q96A33 483 aaKnown RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 NUDT12Q9BQG2 462 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 TUBGCP2Q9BSJ2 902 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 TRIM9Q9C026 710 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 AGPAT5Q9NUQ2 364 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 KBTBD4Q9NVX7 518 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 ARGLU1Q9NWB6 273 aaPredicted RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 LUC7L2Q9Y383 392 aaKnown RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 MRFAP1Q9Y605 127 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 TNRC6CQ9HCJ0 1690 aaKnown RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 TESPA1A2RU30 521 aaPredicted RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L10C9JJH3 530 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 POLRMTO00411 1230 aaKnown RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 RGL2O15211 777 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 TPD52L2O43399 206 aaKnown RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 RHOXF2BP0C7M4 288 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 ADCY7P51828 1080 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 IKQ13123 557 aaPredicted RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 CT47A1Q5JQC4 288 aaPredicted RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 ADGRF4Q8IZF3 695 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 TBC1D22AQ8WUA7 517 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 RHOXF2Q9BQY4 288 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 CCSER1Q9C0I3 900 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 ZHX3Q9H4I2 956 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 SERPINB13Q9UIV8 391 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 COL5A3P25940 1745 aaPredicted RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 RREB1Q92766 1687 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 SNED1Q8TER0 1413 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 A0A1B0GUL6 1792 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 EFCAB8A8MWE9 144 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 TAL1P17542 331 aaPredicted RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 GALNT17Q6IS24 598 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 CYP26C1Q6V0L0 522 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 DAGLBQ8NCG7 672 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 SNX29Q8TEQ0 813 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 NOC4LQ9BVI4 516 aaKnown RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 PPME1Q9Y570 386 aa9.79□□□□□ -0.84
LINC00558-201ENST00000569422 MORC2Q9Y6X9 1032 aaPredicted RBP9.79□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L15C9J2P7 530 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L13C9JLJ4 530 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L11C9JVI0 530 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L18D6R9N7 530 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L22D6RA61 530 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L17D6RBQ6 530 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L19D6RCP7 530 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L20D6RJB6 530 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 H2AFXP16104 143 aaPredicted RBP9.78□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L24Q0WX57 530 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 USP17L6PQ6QN14 398 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 TMTC1Q8IUR5 882 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 GIMAP8Q8ND71 665 aaPredicted RBP9.78□□□□□ -0.84
LINC00558-201ENST00000569422 GLIS3Q8NEA6 775 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 CNOT6LQ96LI5 555 aaKnown RBP9.78□□□□□ -0.84
LINC00558-201ENST00000569422 MMTAG2Q9BU76 263 aaKnown RBP9.78□□□□□ -0.84
LINC00558-201ENST00000569422 NAA15Q9BXJ9 866 aaKnown RBP9.78□□□□□ -0.84
LINC00558-201ENST00000569422 TMX4Q9H1E5 349 aaPredicted RBP9.78□□□□□ -0.84
LINC00558-201ENST00000569422 ROBO3Q96MS0 1386 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 LAMB2P55268 1798 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 CTAGE9A4FU28 777 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 LRRC10BA6NIK2 292 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 RHOBTB3O94955 611 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 POLD1P28340 1107 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 HSPA1LP34931 641 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 CYP27A1Q02318 531 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 BMS1Q14692 1282 aaKnown RBP9.78□□□□□ -0.84
LINC00558-201ENST00000569422 SV2BQ7L1I2 683 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 CERKQ8TCT0 537 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 P2RX5Q93086 422 aa9.78□□□□□ -0.84
LINC00558-201ENST00000569422 DUSP9Q99956 384 aaKnown RBP9.78□□□□□ -0.84
LINC00558-201ENST00000569422 PARD6BQ9BYG5 372 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms