RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 GJB4Q9NTQ9 266 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 RNF186Q9NXI6 227 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 VPS54Q9P1Q0 977 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 DAXXQ9UER7 740 aaPredicted RBP9.74□□□□□ -0.85
SF3B3-212ENST00000568539 CPA4Q9UI42 421 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 TSKSQ9UJT2 592 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 ABCB11O95342 1321 aa9.74□□□□□ -0.85
SF3B3-212ENST00000568539 ESYT2A0FGR8 921 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 SLC25A27O95847 323 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 ALAS1P13196 640 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 RGS19P49795 217 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 NAPAP54920 295 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 TKFCQ3LXA3 575 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 MUM1L1Q5H9M0 696 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 LARP1BQ659C4 914 aaKnown RBP9.73□□□□□ -0.85
SF3B3-212ENST00000568539 SHCBP1Q8NEM2 672 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 FBXO18Q8NFZ0 1043 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 CCDC12Q8WUD4 166 aaPredicted RBP9.73□□□□□ -0.85
SF3B3-212ENST00000568539 CLEC4DQ8WXI8 215 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 C8orf76Q96K31 380 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 PHF20Q9BVI0 1012 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 ZMYND12Q9H0C1 365 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 R3HDMLQ9H3Y0 253 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 RNF146Q9NTX7 359 aa9.73□□□□□ -0.85
SF3B3-212ENST00000568539 MRPL11Q9Y3B7 192 aaKnown RBP9.73□□□□□ -0.85
SF3B3-212ENST00000568539 RLFQ13129 1914 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 SMCO2A6NFE2 343 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 NFIBO00712 420 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 TRPA1O75762 1119 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 TBC1D8O95759 1140 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 XBP1P17861 261 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 ERCC3P19447 782 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 PDCP20941 246 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 SYT1P21579 422 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 COPB2P35606 906 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 DDIT3P35638 169 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 FOSBP53539 338 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 CCNA1P78396 465 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 GHRHRQ02643 423 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 TRIM29Q14134 588 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 NPY5RQ15761 445 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 KRT40Q6A162 431 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 RGS22Q8NE09 1264 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 CHST13Q8NET6 341 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 CCDC148Q8NFR7 591 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 TRERF1Q96PN7 1200 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 PORCNQ9H237 461 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 MROH8Q9H579 483 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 HOMER2Q9NSB8 354 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 SAGE1Q9NXZ1 904 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 KCNJ14Q9UNX9 436 aa9.72□□□□□ -0.85
SF3B3-212ENST00000568539 ADAMTS3O15072 1205 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 MMP1P03956 469 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 CALML3P27482 149 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 HSD17B4P51659 736 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 ADCY7P51828 1080 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 NLRP5P59047 1200 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 GUCY1B3Q02153 619 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 MAP2K1Q02750 393 aaPredicted RBP9.71□□□□□ -0.86
SF3B3-212ENST00000568539 GALNT17Q6IS24 598 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 NCAPG2Q86XI2 1143 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 TEX2Q8IWB9 1127 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 PDCD7Q8N8D1 485 aaKnown RBP9.71□□□□□ -0.86
SF3B3-212ENST00000568539 DAGLBQ8NCG7 672 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 TBC1D5Q92609 795 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 ACAD9Q9H845 621 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 PSTPIP2Q9H939 334 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 EFCC1Q9HA90 598 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 C6orf50Q9HD87 102 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 RIC8AQ9NPQ8 531 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 FBXO40Q9UH90 709 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 PCDHA4Q9UN74 947 aa9.71□□□□□ -0.86
SF3B3-212ENST00000568539 M0R2N6 131 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 PIK3CDO00329 1044 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 MEIS2O14770 477 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 STX6O43752 255 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 GNA11P29992 359 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 MAPK4P31152 587 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 CLK2P49760 499 aaKnown RBP9.7□□□□□ -0.86
SF3B3-212ENST00000568539 MRPL12P52815 198 aaKnown RBP9.7□□□□□ -0.86
SF3B3-212ENST00000568539 MCF2L2Q86YR7 1114 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 BLIDQ8IZY5 108 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 SAMD3Q8N6K7 520 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 OXER1Q8TDS5 423 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 CUL5Q93034 780 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 MAF1Q9H063 256 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 GLT8D2Q9H1C3 349 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 A1CFQ9NQ94 594 aaKnown RBP9.7□□□□□ -0.86
SF3B3-212ENST00000568539 MAP3K20Q9NYL2 800 aaKnown RBP9.7□□□□□ -0.86
SF3B3-212ENST00000568539 MTMR6Q9Y217 621 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 PARP14Q460N5 1801 aa9.7□□□□□ -0.86
SF3B3-212ENST00000568539 VPS37CA5D8V6 355 aaPredicted RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 BTBD18B2RXH4 712 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 H3BQV1 296 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 GCOM1H8Y6P7 765 aaPredicted RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 PFASO15067 1338 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 STRNO43815 780 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 CFBP00751 764 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 POLR2MP0CAP2 368 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 PDIA4P13667 645 aaKnown RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms