RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 PWP2Q15269 919 aaKnown RBP17.57■□□□□ 0.4
CLN3-228ENST00000567804 AKNAD1Q5T1N1 836 aa17.57■□□□□ 0.4
CLN3-228ENST00000567804 MFSD6Q6ZSS7 791 aa17.57■□□□□ 0.4
CLN3-228ENST00000567804 KIAA1211Q6ZU35 1233 aa17.57■□□□□ 0.4
CLN3-228ENST00000567804 ZNF365Q70YC5 407 aa17.57■□□□□ 0.4
CLN3-228ENST00000567804 TIFAQ96CG3 184 aa17.57■□□□□ 0.4
CLN3-228ENST00000567804 SCN5AQ14524 2016 aa17.57■□□□□ 0.4
CLN3-228ENST00000567804 KIAA1217Q5T5P2 1943 aa17.57■□□□□ 0.4
CLN3-228ENST00000567804 SNHG28P0DPA3 235 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 ZNF543Q08ER8 600 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 DUSP28Q4G0W2 176 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 SLC30A10Q6XR72 485 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 TBC1D10CQ8IV04 446 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 SMC5Q8IY18 1101 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 CLEC4DQ8WXI8 215 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 RILPL2Q969X0 211 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 TTC14Q96N46 770 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 HIPK3Q9H422 1215 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 ZNF576Q9H609 170 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 IL23AQ9NPF7 189 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 TANC1Q9C0D5 1861 aa17.56■□□□□ 0.4
CLN3-228ENST00000567804 UMODL1Q5DID0 1318 aa17.55■□□□□ 0.4
CLN3-228ENST00000567804 WDR19Q8NEZ3 1342 aa17.55■□□□□ 0.4
CLN3-228ENST00000567804 RBM47A0AV96 593 aaKnown RBP17.55■□□□□ 0.4
CLN3-228ENST00000567804 PTPDC1A2A3K4 754 aa17.55■□□□□ 0.4
CLN3-228ENST00000567804 B4GALT4O60513 344 aa17.55■□□□□ 0.4
CLN3-228ENST00000567804 PSMC6P62333 389 aa17.55■□□□□ 0.4
CLN3-228ENST00000567804 AAMPQ13685 434 aa17.55■□□□□ 0.4
CLN3-228ENST00000567804 PBX4Q9BYU1 374 aa17.55■□□□□ 0.4
CLN3-228ENST00000567804 PNMA2Q9UL42 364 aa17.55■□□□□ 0.4
CLN3-228ENST00000567804 NEDD4P46934 1319 aa17.54■□□□□ 0.4
CLN3-228ENST00000567804 GRXCR1A8MXD5 290 aa17.54■□□□□ 0.4
CLN3-228ENST00000567804 SDSP20132 328 aa17.54■□□□□ 0.4
CLN3-228ENST00000567804 CALML3P27482 149 aa17.54■□□□□ 0.4
CLN3-228ENST00000567804 PBX2P40425 430 aa17.54■□□□□ 0.4
CLN3-228ENST00000567804 MFAP1P55081 439 aaKnown RBP17.54■□□□□ 0.4
CLN3-228ENST00000567804 B4GALNT3Q6L9W6 998 aa17.54■□□□□ 0.4
CLN3-228ENST00000567804 RNF207Q6ZRF8 634 aa17.54■□□□□ 0.4
CLN3-228ENST00000567804 HERVK_113Q902F9 699 aa17.54■□□□□ 0.4
CLN3-228ENST00000567804 NOC4LQ9BVI4 516 aaKnown RBP17.54■□□□□ 0.4
CLN3-228ENST00000567804 WDR11Q9BZH6 1224 aa17.54■□□□□ 0.4
CLN3-228ENST00000567804 TRPV6Q9H1D0 765 aa17.54■□□□□ 0.4
CLN3-228ENST00000567804 RNF41Q9H4P4 317 aaPredicted RBP17.54■□□□□ 0.4
CLN3-228ENST00000567804 CHD9Q3L8U1 2897 aa17.53■□□□□ 0.4
CLN3-228ENST00000567804 ESR2Q92731 530 aa17.53■□□□□ 0.4
CLN3-228ENST00000567804 WNT8AQ9H1J5 351 aa17.53■□□□□ 0.4
CLN3-228ENST00000567804 OSBPL3Q9H4L5 887 aa17.53■□□□□ 0.4
CLN3-228ENST00000567804 POLR3EQ9NVU0 708 aa17.53■□□□□ 0.4
CLN3-228ENST00000567804 EDNRBP24530 442 aa17.52■□□□□ 0.4
CLN3-228ENST00000567804 CPT1AP50416 773 aa17.52■□□□□ 0.4
CLN3-228ENST00000567804 CCL23P55773 120 aa17.52■□□□□ 0.4
CLN3-228ENST00000567804 RPS6P62753 249 aaKnown RBP17.52■□□□□ 0.4
CLN3-228ENST00000567804 GPATCH4Q5T3I0 446 aaKnown RBP17.52■□□□□ 0.4
CLN3-228ENST00000567804 CHD1LQ86WJ1 897 aa17.52■□□□□ 0.4
CLN3-228ENST00000567804 PLEKHM2Q8IWE5 1019 aa17.52■□□□□ 0.4
CLN3-228ENST00000567804 DNERQ8NFT8 737 aa17.52■□□□□ 0.4
CLN3-228ENST00000567804 OR6J1Q8NGC5 347 aa17.52■□□□□ 0.4
CLN3-228ENST00000567804 ZKSCAN3Q9BRR0 538 aa17.52■□□□□ 0.4
CLN3-228ENST00000567804 ALDH8A1Q9H2A2 487 aaPredicted RBP17.52■□□□□ 0.4
CLN3-228ENST00000567804 MTIF3Q9H2K0 278 aaKnown RBP17.52■□□□□ 0.4
CLN3-228ENST00000567804 RWDD1Q9H446 243 aaPredicted RBP17.52■□□□□ 0.4
CLN3-228ENST00000567804 CXXC1Q9P0U4 656 aaPredicted RBP17.52■□□□□ 0.4
CLN3-228ENST00000567804 ZNF213O14771 459 aa17.51■□□□□ 0.39
CLN3-228ENST00000567804 FGBP02675 491 aa17.51■□□□□ 0.39
CLN3-228ENST00000567804 NT5C2P49902 561 aa17.51■□□□□ 0.39
CLN3-228ENST00000567804 PURAQ00577 322 aaKnown RBP17.51■□□□□ 0.39
CLN3-228ENST00000567804 PDE4DQ08499 809 aa17.51■□□□□ 0.39
CLN3-228ENST00000567804 DGKHQ86XP1 1220 aa17.51■□□□□ 0.39
CLN3-228ENST00000567804 USP38Q8NB14 1042 aa17.51■□□□□ 0.39
CLN3-228ENST00000567804 MPHOSPH6Q99547 160 aaKnown RBP17.51■□□□□ 0.39
CLN3-228ENST00000567804 TRIP12Q14669 1992 aaPredicted RBP17.51■□□□□ 0.39
CLN3-228ENST00000567804 NKRFO15226 690 aaKnown RBP eCLIP17.5■□□□□ 0.39
CLN3-228ENST00000567804 MYL3P08590 195 aa17.5■□□□□ 0.39
CLN3-228ENST00000567804 GOLGA8HP0CJ92 632 aa17.5■□□□□ 0.39
CLN3-228ENST00000567804 PPP2R5BQ15173 497 aa17.5■□□□□ 0.39
CLN3-228ENST00000567804 RAB30Q15771 203 aa17.5■□□□□ 0.39
CLN3-228ENST00000567804 USH1GQ495M9 461 aa17.5■□□□□ 0.39
CLN3-228ENST00000567804 CWC27Q6UX04 472 aaKnown RBP17.5■□□□□ 0.39
CLN3-228ENST00000567804 OTOP2Q7RTS6 562 aa17.5■□□□□ 0.39
CLN3-228ENST00000567804 PNMA1Q8ND90 353 aa17.5■□□□□ 0.39
CLN3-228ENST00000567804 SCFD2Q8WU76 684 aa17.5■□□□□ 0.39
CLN3-228ENST00000567804 MTG1Q9BT17 334 aaPredicted RBP17.5■□□□□ 0.39
CLN3-228ENST00000567804 CPVLQ9H3G5 476 aa17.5■□□□□ 0.39
CLN3-228ENST00000567804 MYH7BA7E2Y1 1941 aa17.5■□□□□ 0.39
CLN3-228ENST00000567804 TNKSO95271 1327 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 KDM4AO75164 1064 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 IGHDP01880 384 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 NUCB1Q02818 461 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 IQCA1Q86XH1 822 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 RPUSD2Q8IZ73 545 aaKnown RBP17.49■□□□□ 0.39
CLN3-228ENST00000567804 RGS22Q8NE09 1264 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 VWCEQ96DN2 955 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 SCLYQ96I15 445 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 GAS2L1Q99501 681 aaPredicted RBP17.49■□□□□ 0.39
CLN3-228ENST00000567804 UBA5Q9GZZ9 404 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 DIAPH3Q9NSV4 1193 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 TRMT13Q9NUP7 481 aaKnown RBP17.49■□□□□ 0.39
CLN3-228ENST00000567804 MSRAQ9UJ68 235 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 PTPRSQ13332 1948 aa17.49■□□□□ 0.39
CLN3-228ENST00000567804 RAD50Q92878 1312 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms