RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 RGS2P41220 211 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 GHRHRQ02643 423 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 IRF5Q13568 498 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 KCTD2Q14681 263 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 PPP2R5BQ15173 497 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 PFKFB3Q16875 520 aaPredicted RBP11.31□□□□□ -0.6
CLK3-208ENST00000562626 HEATR3Q7Z4Q2 680 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 ABRAQ8N0Z2 381 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 ANKRD35Q8N283 1001 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 TRPV1Q8NER1 839 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 SOCS4Q8WXH5 440 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 MAML3Q96JK9 1138 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 APBA2Q99767 749 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 RNF26Q9BY78 433 aaPredicted RBP11.31□□□□□ -0.6
CLK3-208ENST00000562626 SEC63Q9UGP8 760 aaKnown RBP11.31□□□□□ -0.6
CLK3-208ENST00000562626 FBXO40Q9UH90 709 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 BRCA2P51587 3418 aa11.31□□□□□ -0.6
CLK3-208ENST00000562626 CCDC196A0A1B0GTZ2 297 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 PTPDC1A2A3K4 754 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 MEIS2O14770 477 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 MYCP01106 439 aaPredicted RBP11.3□□□□□ -0.6
CLK3-208ENST00000562626 SCG2P13521 617 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 CALML3P27482 149 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 CYP2C19P33261 490 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 HSD17B4P51659 736 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 FOSBP53539 338 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 MTFR1Q15390 333 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 NPY5RQ15761 445 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 UBE2SQ16763 222 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 PRAMEF19Q5SWL8 479 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 USP17L6PQ6QN14 398 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 RNF207Q6ZRF8 634 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 DPP9Q86TI2 863 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 RAET1EQ8TD07 263 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 SYTL5Q8TDW5 730 aaPredicted RBP11.3□□□□□ -0.6
CLK3-208ENST00000562626 DDX11Q96FC9 970 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 TMX3Q96JJ7 454 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 TAAR1Q96RJ0 339 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 VPS54Q9P1Q0 977 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 MRPL11Q9Y3B7 192 aaKnown RBP11.3□□□□□ -0.6
CLK3-208ENST00000562626 STK36Q9NRP7 1315 aa11.3□□□□□ -0.6
CLK3-208ENST00000562626 TCHHQ07283 1943 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 CPLX1O14810 134 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 ST18O60284 1047 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 SNAI1O95863 264 aaPredicted RBP11.29□□□□□ -0.6
CLK3-208ENST00000562626 CFBP00751 764 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 INHAP05111 366 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 XRCC5P13010 732 aaKnown RBP11.29□□□□□ -0.6
CLK3-208ENST00000562626 PTGS1P23219 599 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 HOXD10P28358 340 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 GRK4P32298 578 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 PRMT2P55345 433 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 SSRP1Q08945 709 aaKnown RBP11.29□□□□□ -0.6
CLK3-208ENST00000562626 IL31RAQ8NI17 732 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 SMARCC2Q8TAQ2 1214 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 ZFP91Q96JP5 570 aaPredicted RBP11.29□□□□□ -0.6
CLK3-208ENST00000562626 PGBD1Q96JS3 809 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 KATNBL1Q9H079 304 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 TMEM260Q9NX78 707 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 BARHL2Q9NY43 387 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 PFASO15067 1338 aa11.29□□□□□ -0.6
CLK3-208ENST00000562626 POTEB2H3BUK9 544 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 ADCY6O43306 1168 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 CCND3P30281 292 aaPredicted RBP11.28□□□□□ -0.6
CLK3-208ENST00000562626 ALDH5A1P51649 535 aaPredicted RBP11.28□□□□□ -0.6
CLK3-208ENST00000562626 NAPAP54920 295 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 UBXN2AP68543 259 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 CACNB2Q08289 660 aaPredicted RBP11.28□□□□□ -0.6
CLK3-208ENST00000562626 ARHGEF6Q15052 776 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 TMEM63BQ5T3F8 832 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 MAP3K21Q5TCX8 1036 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 RGS22Q8NE09 1264 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 RASGRP4Q8TDF6 673 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 PXYLP1Q8TE99 480 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 ZSCAN31Q96LW9 406 aaPredicted RBP11.28□□□□□ -0.6
CLK3-208ENST00000562626 ORC3Q9UBD5 711 aaPredicted RBP11.28□□□□□ -0.6
CLK3-208ENST00000562626 KCNJ14Q9UNX9 436 aa11.28□□□□□ -0.6
CLK3-208ENST00000562626 MYH9P35579 1960 aaKnown RBP11.28□□□□□ -0.6
CLK3-208ENST00000562626 TRIP12Q14669 1992 aaPredicted RBP11.27□□□□□ -0.61
CLK3-208ENST00000562626 SMCO2A6NFE2 343 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 DEXIO95424 95 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 HMGCRP04035 888 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 PRKAR2AP13861 404 aaKnown RBP11.27□□□□□ -0.61
CLK3-208ENST00000562626 PKN2Q16513 984 aaKnown RBP11.27□□□□□ -0.61
CLK3-208ENST00000562626 SLC9C1Q4G0N8 1177 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 HABP4Q5JVS0 413 aaKnown RBP11.27□□□□□ -0.61
CLK3-208ENST00000562626 OLFML2BQ68BL8 750 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 ARMCX2Q7L311 632 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 FCHSD1Q86WN1 690 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 SLAIN1Q8ND83 568 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 LENG1Q96BZ8 264 aaPredicted RBP11.27□□□□□ -0.61
CLK3-208ENST00000562626 ARMC5Q96C12 935 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 ZNF333Q96JL9 665 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 TINF2Q9BSI4 451 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 UNC93B1Q9H1C4 597 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 SH2B1Q9NRF2 756 aaPredicted RBP11.27□□□□□ -0.61
CLK3-208ENST00000562626 PNMA2Q9UL42 364 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 DIS3Q9Y2L1 958 aaKnown RBP11.27□□□□□ -0.61
CLK3-208ENST00000562626 RPTORQ8N122 1335 aa11.27□□□□□ -0.61
CLK3-208ENST00000562626 GCOM1H8Y6P7 765 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms