RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TTI2Q6NXR4 508 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 KRT26Q7Z3Y9 468 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 SMCR8Q8TEV9 937 aaPredicted RBP12.62□□□□□ -0.39
CUX1-218ENST00000560541 GBP3Q9H0R5 595 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 ARPP21Q9UBL0 812 aaPredicted RBP12.62□□□□□ -0.39
CUX1-218ENST00000560541 ZNF652Q9Y2D9 606 aa12.62□□□□□ -0.39
CUX1-218ENST00000560541 PSMD14O00487 310 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 PLEKP08567 350 aaPredicted RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 EEF1GP26641 437 aaKnown RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 PDE4DQ08499 809 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 STK4Q13043 487 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 LETM2Q2VYF4 491 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 GBP6Q6ZN66 633 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 FBXO33Q7Z6M2 555 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 TADA2BQ86TJ2 420 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 NBPF5PQ86XG9 351 aaPredicted RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 DZIP1Q86YF9 867 aaKnown RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 DUSP9Q99956 384 aaKnown RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 FAM204AQ9H8W3 233 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 NHEJ1Q9H9Q4 299 aaPredicted RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 MKNK2Q9HBH9 465 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 JADE2Q9NQC1 790 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 EXOC1Q9NV70 894 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 DOT1LQ8TEK3 1739 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 RASSF10A6NK89 507 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 HNRNPH1P31943 449 aaKnown RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 MTIF2P46199 727 aaKnown RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 ASIC1P78348 528 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 ANKRD40Q6AI12 368 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 GIMAP8Q8ND71 665 aaPredicted RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 CNOT6LQ96LI5 555 aaKnown RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 PSMB7Q99436 277 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 ATP8A2Q9NTI2 1148 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 PHLPP1O60346 1717 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 A0A1B0GUL6 1792 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 MYBL2P10244 700 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 USP14P54578 494 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 DIXDC1Q155Q3 683 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 TXNRD1Q16881 649 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 MARCH10Q8NA82 808 aaPredicted RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 PSD3Q9NYI0 1048 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 SAP30BPQ9UHR5 308 aaKnown RBP12.61□□□□□ -0.39
CUX1-218ENST00000560541 MAD2L2Q9UI95 211 aa12.61□□□□□ -0.39
CUX1-218ENST00000560541 TTC36A6NLP5 189 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 PDE2AO00408 941 aaPredicted RBP12.6□□□□□ -0.39
CUX1-218ENST00000560541 CCNT1O60563 726 aaKnown RBP12.6□□□□□ -0.39
CUX1-218ENST00000560541 IPO7O95373 1038 aaKnown RBP12.6□□□□□ -0.39
CUX1-218ENST00000560541 IDEP14735 1019 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 DNM2P50570 870 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 C2orf54Q08AI8 447 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 FAXDC2Q96IV6 333 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 THAP9Q9H5L6 903 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 KBTBD4Q9NVX7 518 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 A0A1W2PQC6 194 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 KRT86O43790 486 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 RNF40O75150 1001 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 RHOBTB3O94955 611 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 TSPY3P0CV98 308 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 TSPY8P0CW00 308 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 SRGNP10124 158 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 SF3B3Q15393 1217 aaKnown RBP12.6□□□□□ -0.39
CUX1-218ENST00000560541 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.6□□□□□ -0.39
CUX1-218ENST00000560541 CABP7Q86V35 215 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 MIEF2Q96C03 454 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 NOC4LQ9BVI4 516 aaKnown RBP12.6□□□□□ -0.39
CUX1-218ENST00000560541 VAT1LQ9HCJ6 419 aa12.6□□□□□ -0.39
CUX1-218ENST00000560541 ZNHIT6Q9NWK9 470 aaKnown RBP12.6□□□□□ -0.39
CUX1-218ENST00000560541 KLHL33A6NCF5 533 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 TECP42680 631 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 RPS8P62241 208 aaKnown RBP12.59□□□□□ -0.39
CUX1-218ENST00000560541 KRT83P78385 493 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 TBC1D9BQ66K14 1250 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 WDR93Q6P2C0 686 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 KIRREL3Q8IZU9 778 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 FAM71BQ8TC56 605 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 SH3RF3Q8TEJ3 882 aaPredicted RBP12.59□□□□□ -0.39
CUX1-218ENST00000560541 M0R2N6 131 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 CYLC1P35663 651 aaPredicted RBP12.59□□□□□ -0.39
CUX1-218ENST00000560541 TUBB4BP68371 445 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 KCNB1Q14721 858 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 N4BP2L2Q92802 583 aaPredicted RBP12.59□□□□□ -0.39
CUX1-218ENST00000560541 P2RX5Q93086 422 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 THOC1Q96FV9 657 aaKnown RBP12.59□□□□□ -0.39
CUX1-218ENST00000560541 TTYH3Q9C0H2 523 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 SLC39A2Q9NP94 309 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 FAM207AQ9NSI2 230 aaPredicted RBP12.59□□□□□ -0.39
CUX1-218ENST00000560541 LRWD1Q9UFC0 647 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 STXBP3O00186 592 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 MATR3P43243 847 aaKnown RBP eCLIP12.59□□□□□ -0.398e-13■■■□□ 19
CUX1-218ENST00000560541 GRIK5Q16478 980 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 CCDC96Q2M329 555 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 ZC3H12AQ5D1E8 599 aaKnown RBP12.59□□□□□ -0.39
CUX1-218ENST00000560541 TRIM9Q9C026 710 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 TCP11L1Q9NUJ3 509 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 SMARCAL1Q9NZC9 954 aa12.59□□□□□ -0.39
CUX1-218ENST00000560541 ZNF263O14978 683 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 ERLIN2O94905 339 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 SYF2O95926 243 aaKnown RBP12.58□□□□□ -0.4
CUX1-218ENST00000560541 NAPAP54920 295 aa12.58□□□□□ -0.4
CUX1-218ENST00000560541 FKBP15Q5T1M5 1219 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms