RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SPDYE3A6NKU9 549 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 CCNT1O60563 726 aaKnown RBP12.77□□□□□ -0.36
USP3-218ENST00000560202 GTF2A2P52657 109 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 PTGDRQ13258 359 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 PABPC4Q13310 644 aaKnown RBP eCLIP12.77□□□□□ -0.369e-6■■■■□ 24.7
USP3-218ENST00000560202 AXDND1Q5T1B0 1012 aaPredicted RBP12.77□□□□□ -0.36
USP3-218ENST00000560202 SPRYD7Q5W111 196 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 MCF2L2Q86YR7 1114 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 KRI1Q8N9T8 703 aaKnown RBP12.77□□□□□ -0.36
USP3-218ENST00000560202 MS4A4AQ96JQ5 239 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 PKNOX2Q96KN3 472 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 P2RX7Q99572 595 aaKnown RBP12.77□□□□□ -0.36
USP3-218ENST00000560202 ANO3Q9BYT9 981 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 ASCC2Q9H1I8 757 aaPredicted RBP12.77□□□□□ -0.36
USP3-218ENST00000560202 MRVI1Q9Y6F6 885 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 LOC285556D6RIA3 1793 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 PTPRFP10586 1907 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 NFIBO00712 420 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 EDIL3O43854 480 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 CUTAO60888 179 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 CETPP11597 493 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 OSBPP22059 807 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 PTPREP23469 700 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 ATP2C1P98194 919 aaPredicted RBP12.77□□□□□ -0.37
USP3-218ENST00000560202 MKRN3Q13064 507 aaKnown RBP12.77□□□□□ -0.37
USP3-218ENST00000560202 MUM1L1Q5H9M0 696 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 SNRNP48Q6IEG0 339 aaKnown RBP12.77□□□□□ -0.37
USP3-218ENST00000560202 LBX2Q6XYB7 198 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 CCAR1Q8IX12 1150 aaKnown RBP12.77□□□□□ -0.37
USP3-218ENST00000560202 MB21D1Q8N884 522 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 C4orf32Q8N8J7 132 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 SMC1BQ8NDV3 1235 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 TRERF1Q96PN7 1200 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 TEX13BQ9BXU2 312 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 HOMER2Q9NSB8 354 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 FBXO2Q9UK22 296 aaPredicted RBP12.77□□□□□ -0.37
USP3-218ENST00000560202 RIPK3Q9Y572 518 aa12.77□□□□□ -0.37
USP3-218ENST00000560202 SRPRBQ9Y5M8 271 aaKnown RBP12.77□□□□□ -0.37
USP3-218ENST00000560202 RLFQ13129 1914 aa12.76□□□□□ -0.37
USP3-218ENST00000560202 ZBTB48P10074 688 aaPredicted RBP12.76□□□□□ -0.37
USP3-218ENST00000560202 LIG1P18858 919 aa12.76□□□□□ -0.37
USP3-218ENST00000560202 CLCN1P35523 988 aa12.76□□□□□ -0.37
USP3-218ENST00000560202 STAT3P40763 770 aa12.76□□□□□ -0.37
USP3-218ENST00000560202 HSD17B4P51659 736 aa12.76□□□□□ -0.37
USP3-218ENST00000560202 GHRHRQ02643 423 aa12.76□□□□□ -0.37
USP3-218ENST00000560202 ORC2Q13416 577 aaPredicted RBP12.76□□□□□ -0.37
USP3-218ENST00000560202 CAVIN1Q6NZI2 390 aaKnown RBP12.76□□□□□ -0.37
USP3-218ENST00000560202 POTEEQ6S8J3 1075 aa12.76□□□□□ -0.37
USP3-218ENST00000560202 FCHSD1Q86WN1 690 aa12.76□□□□□ -0.37
USP3-218ENST00000560202 CLIC6Q96NY7 704 aa12.76□□□□□ -0.37
USP3-218ENST00000560202 RNF146Q9NTX7 359 aa12.76□□□□□ -0.37
USP3-218ENST00000560202 PARP14Q460N5 1801 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 CCL15-CCL14A0A0B4J2E2 113 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 CMA1P23946 247 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 SREBF1P36956 1147 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 USP11P51784 963 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 HERVK_113P62684 666 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 PLS1Q14651 629 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 CCL15Q16663 113 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 TKFCQ3LXA3 575 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 PPP4R3AQ6IN85 833 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 SAPCD2Q86UD0 394 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 SAMD3Q8N6K7 520 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 FSIP1Q8NA03 581 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 CRYGNQ8WXF5 182 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 MRPS27Q92552 414 aaKnown RBP12.75□□□□□ -0.37
USP3-218ENST00000560202 FERMT2Q96AC1 680 aa12.75□□□□□ -0.37
USP3-218ENST00000560202 NAP1L4Q99733 375 aaKnown RBP12.75□□□□□ -0.37
USP3-218ENST00000560202 MAP3K20Q9NYL2 800 aaKnown RBP12.75□□□□□ -0.37
USP3-218ENST00000560202 LAD1O00515 517 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 NEMFO60524 1076 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 TDP2O95551 362 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 ZNF157P51786 506 aaPredicted RBP12.74□□□□□ -0.37
USP3-218ENST00000560202 ARHGAP4P98171 946 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 GRIN1Q05586 938 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 ARL6IP4Q66PJ3 421 aaKnown RBP12.74□□□□□ -0.37
USP3-218ENST00000560202 SHC4Q6S5L8 630 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 CCDC73Q6ZRK6 1079 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 ZNF579Q8NAF0 562 aaKnown RBP12.74□□□□□ -0.37
USP3-218ENST00000560202 BRI3BPQ8WY22 251 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 GZF1Q9H116 711 aaPredicted RBP12.74□□□□□ -0.37
USP3-218ENST00000560202 TMEM60Q9H2L4 133 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 GOLPH3LQ9H4A5 285 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 TMEM63CQ9P1W3 806 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 BTBD7Q9P203 1132 aa12.74□□□□□ -0.37
USP3-218ENST00000560202 A0A1B0GVL5 298 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 GCFC2P16383 781 aaKnown RBP12.73□□□□□ -0.37
USP3-218ENST00000560202 RESP18Q5W5W9 173 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 ANKRD23Q86SG2 305 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 RASAL3Q86YV0 1011 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 SYAP1Q96A49 352 aaPredicted RBP12.73□□□□□ -0.37
USP3-218ENST00000560202 CSRNP2Q9H175 543 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 EHMT1Q9H9B1 1298 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 DACT1Q9NYF0 836 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 PNMA3Q9UL41 463 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 SLC45A1Q9Y2W3 748 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 CYP3A7-CYP3A51PA0A087WV96 503 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 VWA3AA6NCI4 1184 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 BTBD19C9JJ37 291 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 PDHXO00330 501 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms