RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GOLGA8KD6RF30 607 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 NR1D1P20393 614 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 ZBED6P86452 979 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 LLGL1Q15334 1064 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 PAPD7Q5XG87 772 aaKnown RBP12.56□□□□□ -0.4
LDLR-208ENST00000558518 CCDC121Q6ZUS5 278 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 CREG2Q8IUH2 290 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 DYNLL2Q96FJ2 89 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 SEMA3EO15041 775 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 AARSP49588 968 aaKnown RBP eCLIP12.56□□□□□ -0.4
LDLR-208ENST00000558518 EPHB4P54760 987 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 KCNV1Q6PIU1 500 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 TAF4BQ92750 862 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 P2RX5Q93086 422 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 CABS1Q96KC9 395 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 DPH5Q9H2P9 285 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 KCNK3O14649 394 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 PRPF3O43395 683 aaKnown RBP12.55□□□□□ -0.4
LDLR-208ENST00000558518 CEP104O60308 925 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 ATP6V1AP38606 617 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 POTEDQ86YR6 584 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 ARHGAP20Q9P2F6 1191 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 SAP30BPQ9UHR5 308 aaKnown RBP12.55□□□□□ -0.4
LDLR-208ENST00000558518 SALL4Q9UJQ4 1053 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 UBR1Q8IWV7 1749 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 RPS6KA5O75582 802 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 PALMO75781 387 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 LSP1P33241 339 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 POLR2FP61218 127 aaKnown RBP12.55□□□□□ -0.4
LDLR-208ENST00000558518 IFFO1Q0D2I5 559 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 TXNRD1Q16881 649 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 TMTC3Q6ZXV5 915 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 ACSBG1Q96GR2 724 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 GGT7Q9UJ14 662 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 USP17L3A6NCW0 530 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 USP17L4A6NCW7 530 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 TRAF5O00463 557 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 CSF1RP07333 972 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 NAPAP54920 295 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 TFAP4Q01664 338 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 B4GALNT4Q76KP1 1039 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 USP17L1Q7RTZ2 530 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 IFT20Q8IY31 132 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 DNAJC7Q99615 494 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 UBA5Q9GZZ9 404 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 BIN2Q9UBW5 565 aaPredicted RBP12.55□□□□□ -0.4
LDLR-208ENST00000558518 ADAMTS1Q9UHI8 967 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 PLAAQ9Y263 795 aa12.55□□□□□ -0.4
LDLR-208ENST00000558518 PCDH11XQ9BZA7 1347 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 PCDH11YQ9BZA8 1340 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 GNAT2P19087 354 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 ARID4AP29374 1257 aaPredicted RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 NF2P35240 595 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 KCNQ4P56696 695 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 MKRN4PQ13434 485 aaPredicted RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 CFAP221Q4G0U5 840 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 HAUS3Q68CZ6 603 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 CPLX4Q7Z7G2 160 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 PIGBQ92521 554 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 MTMR8Q96EF0 704 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 RPGRIP1Q96KN7 1286 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 NOX5Q96PH1 765 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 SLC24A3Q9HC58 644 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 SEPT11Q9NVA2 429 aaKnown RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 MED1Q15648 1581 aaPredicted RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 ABCC12Q96J65 1359 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 GOLGB1Q14789 3259 aaKnown RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 MAP3K15Q6ZN16 1313 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 IL2RBP14784 551 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 EEF1GP26641 437 aaKnown RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 CHRNDQ07001 517 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 SLC44A5Q8NCS7 719 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 GLIS3Q8NEA6 775 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 AENQ8WTP8 325 aaKnown RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 N4BP2L2Q92802 583 aaPredicted RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 BAIAP2L1Q9UHR4 511 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 NFAT5O94916 1531 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 PPP1R12BO60237 982 aaPredicted RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 USP17L8P0C7I0 530 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 PDHBP11177 359 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 SCP2P22307 547 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 EIF6P56537 245 aaKnown RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 TROAPQ12815 778 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 KIAA0753Q2KHM9 967 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 TCERG1LQ5VWI1 586 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 PNMA8AQ86V59 439 aaPredicted RBP12.54□□□□□ -0.4
LDLR-208ENST00000558518 BANK1Q8NDB2 785 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 TBC1D5Q92609 795 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 CCT8L2Q96SF2 557 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 SELENOSQ9BQE4 189 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 NIP7Q9Y221 180 aaKnown RBP eCLIP12.54□□□□□ -0.4
LDLR-208ENST00000558518 MRC1P22897 1456 aa12.54□□□□□ -0.4
LDLR-208ENST00000558518 SPATA31A3Q5VYP0 1347 aa12.53□□□□□ -0.4
LDLR-208ENST00000558518 SRGNP10124 158 aa12.53□□□□□ -0.4
LDLR-208ENST00000558518 CTNNA1P35221 906 aaKnown RBP12.53□□□□□ -0.4
LDLR-208ENST00000558518 ZNF473Q8WTR7 871 aaKnown RBP12.53□□□□□ -0.4
LDLR-208ENST00000558518 NDST4Q9H3R1 872 aa12.53□□□□□ -0.4
LDLR-208ENST00000558518 NWD2Q9ULI1 1742 aa12.53□□□□□ -0.4
LDLR-208ENST00000558518 TARSL2A2RTX5 802 aaKnown RBP12.53□□□□□ -0.4
LDLR-208ENST00000558518 MEFVO15553 781 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms