RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	MYH4	Q9Y623	1939 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	IGKV6D-41	A0A0C4DH26	115 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	CA3	P07451	260 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	CYP2C9	P11712	490 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	AAK1	Q2M2I8	961 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	EEPD1	Q7L9B9	569 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	DEFB128	Q7Z7B8	93 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	TLK2	Q86UE8	772 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	RPUSD2	Q8IZ73	545 aa	Known RBP	10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	CHST13	Q8NET6	341 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	CHMP4C	Q96CF2	233 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	C11orf16	Q9NQ32	467 aa		10.35	□□□□□ -0.75
SYNE2-222	ENST00000556725	FAM86C2P	A6NEL3	165 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	GSG1L2	A8MUP6	293 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	MINDY4B	A8MYZ0	360 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	RBAK-RBAKDN	I3L0D1	243 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	CABYR	O75952	493 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	POU3F3	P20264	500 aa	Predicted RBP	10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	UBE3C	Q15386	1083 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	HSP90AB4P	Q58FF6	505 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	TMEM67	Q5HYA8	995 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	TAPT1	Q6NXT6	567 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	SPRED2	Q7Z698	418 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	SIRT2	Q8IXJ6	389 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	PANK1	Q8TE04	598 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	PPP1R13L	Q8WUF5	828 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	KIF1BP	Q96EK5	621 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	DDRGK1	Q96HY6	314 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	PURB	Q96QR8	312 aa	Known RBP	10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	HAUS7	Q99871	368 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	AP5M1	Q9H0R1	490 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	MKNK2	Q9HBH9	465 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	CD320	Q9NPF0	282 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	A1CF	Q9NQ94	594 aa	Known RBP	10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	TRMT13	Q9NUP7	481 aa	Known RBP	10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	FBXO40	Q9UH90	709 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	FEM1B	Q9UK73	627 aa		10.34	□□□□□ -0.75
SYNE2-222	ENST00000556725	LRRC37A2	A6NM11	1700 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	MYH7	P12883	1935 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	GTPBP6	O43824	516 aa	Predicted RBP	10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	PRDM1	O75626	825 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	NUDT7	P0C024	238 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	ATP5J	P18859	108 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	SNAP25	P60880	206 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	PLCB2	Q00722	1185 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	TAP1	Q03518	808 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	SBK1	Q52WX2	424 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	TMEM31	Q5JXX7	168 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	FBXO16	Q8IX29	292 aa	Predicted RBP	10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	LRRC47	Q8N1G4	583 aa	Known RBP	10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	ARNTL2	Q8WYA1	636 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	MKL1	Q969V6	931 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	CEP95	Q96GE4	821 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	STRBP	Q96SI9	672 aa	Known RBP	10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	ARIH1	Q9Y4X5	557 aa	Predicted RBP	10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	ZNF536	O15090	1300 aa		10.33	□□□□□ -0.76
SYNE2-222	ENST00000556725	ASB14	A6NK59	587 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	TMEM232	C9JQI7	657 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	BMP3	P12645	472 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	OAZ1	P54368	228 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	MUM1L1	Q5H9M0	696 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	SLFN13	Q68D06	897 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	IQSEC1	Q6DN90	963 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	ADGRD1	Q6QNK2	874 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	KIAA1211	Q6ZU35	1233 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	TRERF1	Q96PN7	1200 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	ACAD9	Q9H845	621 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	RNF146	Q9NTX7	359 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	MTMR4	Q9NYA4	1195 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	ARPP21	Q9UBL0	812 aa	Predicted RBP	10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	COG5	Q9UP83	839 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	LHX6	Q9UPM6	363 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	COG6	Q9Y2V7	657 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	HCN4	Q9Y3Q4	1203 aa		10.32	□□□□□ -0.76
SYNE2-222	ENST00000556725	ZEB2	O60315	1214 aa		10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	LPXN	O60711	386 aa		10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	GPR37L1	O60883	481 aa		10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	ALAS1	P13196	640 aa		10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	GRB10	Q13322	594 aa		10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	ALYREF	Q86V81	257 aa	Known RBP	10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	ZNF444	Q8N0Y2	327 aa	Predicted RBP	10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	HLA-C	Q95604	372 aa		10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	OSBP2	Q969R2	916 aa		10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	TET1	Q8NFU7	2136 aa		10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	LCT	P09848	1927 aa		10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	TNKS	O95271	1327 aa		10.31	□□□□□ -0.76
SYNE2-222	ENST00000556725	TTLL1	O95922	423 aa		10.3	□□□□□ -0.76
SYNE2-222	ENST00000556725	TMCO2	Q7Z6W1	182 aa	Predicted RBP	10.3	□□□□□ -0.76
SYNE2-222	ENST00000556725	HERC6	Q8IVU3	1022 aa		10.3	□□□□□ -0.76
SYNE2-222	ENST00000556725	GMCL1P1	Q8NEA9	526 aa		10.3	□□□□□ -0.76
SYNE2-222	ENST00000556725	SEZ6L	Q9BYH1	1024 aa		10.3	□□□□□ -0.76
SYNE2-222	ENST00000556725	CYP39A1	Q9NYL5	469 aa		10.3	□□□□□ -0.76
SYNE2-222	ENST00000556725	ISY1	Q9ULR0	285 aa	Known RBP	10.3	□□□□□ -0.76
SYNE2-222	ENST00000556725		Q9Y3F1	56 aa		10.3	□□□□□ -0.76
SYNE2-222	ENST00000556725	PTPRS	Q13332	1948 aa		10.3	□□□□□ -0.76
SYNE2-222	ENST00000556725	WDFY4	Q6ZS81	3184 aa		10.3	□□□□□ -0.76
SYNE2-222	ENST00000556725	TRIP12	Q14669	1992 aa	Predicted RBP	10.29	□□□□□ -0.76

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