RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 KIFC2Q96AC6 838 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 AGPAT5Q9NUQ2 364 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 FHOD1Q9Y613 1164 aa16.49■□□□□ 0.23
CUX1-215ENST00000556210 ANKRD65E5RJM6 399 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 ECM2O94769 699 aaPredicted RBP16.48■□□□□ 0.23
CUX1-215ENST00000556210 APBA3O96018 575 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 H2AFXP16104 143 aaPredicted RBP16.48■□□□□ 0.23
CUX1-215ENST00000556210 ATP2B4P23634 1241 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 RASSF7Q02833 373 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 DPYDQ12882 1025 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 BRD3Q15059 726 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 TRIM31Q9BZY9 425 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 ABHD10Q9NUJ1 306 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 RWDD2AQ9UIY3 292 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 XRN1Q8IZH2 1706 aaKnown RBP16.48■□□□□ 0.23
CUX1-215ENST00000556210 TRAPPC10P48553 1259 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 TTC19Q6DKK2 380 aaPredicted RBP16.48■□□□□ 0.23
CUX1-215ENST00000556210 KLHL7Q8IXQ5 586 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 ZNF446Q9NWS9 450 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 ADAM21Q9UKJ8 722 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 PCDHA6Q9UN73 950 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 PCDHA8Q9Y5H6 950 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 USP17L10C9JJH3 530 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 CCDC113Q9H0I3 377 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 ZEB2O60315 1214 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 NR1I3Q14994 352 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 AEBP2Q6ZN18 517 aaPredicted RBP16.48■□□□□ 0.23
CUX1-215ENST00000556210 SRGAP1Q7Z6B7 1085 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 ADAT2Q7Z6V5 191 aaKnown RBP16.48■□□□□ 0.23
CUX1-215ENST00000556210 TICAM2Q86XR7 235 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 REXO1L1PQ8IX06 675 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 CCDC65Q8IXS2 484 aa16.48■□□□□ 0.23
CUX1-215ENST00000556210 ADD3Q9UEY8 706 aaKnown RBP16.48■□□□□ 0.23
CUX1-215ENST00000556210 ATP8B1O43520 1251 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 PPP1R12BO60237 982 aaPredicted RBP16.47■□□□□ 0.23
CUX1-215ENST00000556210 GCNT3O95395 438 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 GTF2A1P52655 376 aaPredicted RBP16.47■□□□□ 0.23
CUX1-215ENST00000556210 CERKLQ49MI3 558 aaPredicted RBP16.47■□□□□ 0.23
CUX1-215ENST00000556210 GYPCP04921 128 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 SLC7A5Q01650 507 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 TAX1BP1Q86VP1 789 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 EHBP1Q8NDI1 1231 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.47■□□□□ 0.23
CUX1-215ENST00000556210 ADAMTS3O15072 1205 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 STAT3P40763 770 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 SLFN13Q68D06 897 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 OGFOD1Q8N543 542 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 MB21D1Q8N884 522 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 ERMNQ8TAM6 284 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 LSM14BQ9BX40 385 aaKnown RBP16.47■□□□□ 0.23
CUX1-215ENST00000556210 NAA15Q9BXJ9 866 aaKnown RBP16.47■□□□□ 0.23
CUX1-215ENST00000556210 PANK4Q9NVE7 773 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 INTS13Q9NVM9 706 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 BCS1LQ9Y276 419 aa16.47■□□□□ 0.23
CUX1-215ENST00000556210 THRAP3Q9Y2W1 955 aaKnown RBP16.47■□□□□ 0.23
CUX1-215ENST00000556210 NALCNQ8IZF0 1738 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 E9PMD0 336 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 CLIC2O15247 247 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 FAM13AO94988 1023 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 PCP11498 1178 aaKnown RBP16.46■□□□□ 0.23
CUX1-215ENST00000556210 TAL1P17542 331 aaPredicted RBP16.46■□□□□ 0.23
CUX1-215ENST00000556210 SND1Q7KZF4 910 aaKnown RBP eCLIP16.46■□□□□ 0.23
CUX1-215ENST00000556210 QTRT2Q9H974 415 aaKnown RBP16.46■□□□□ 0.23
CUX1-215ENST00000556210 JCADQ9P266 1359 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 PPP1R3GB7ZBB8 358 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 FAM26FQ5R3K3 315 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 PRR5LQ6MZQ0 368 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 MYOCDQ8IZQ8 938 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 CCDC155Q8N6L0 562 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 TBC1D22AQ8WUA7 517 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 KIF13AQ9H1H9 1805 aa16.46■□□□□ 0.23
CUX1-215ENST00000556210 CCDC151A5D8V7 595 aa16.46■□□□□ 0.22
CUX1-215ENST00000556210 RASA1P20936 1047 aa16.46■□□□□ 0.22
CUX1-215ENST00000556210 ANKRD40Q6AI12 368 aa16.46■□□□□ 0.22
CUX1-215ENST00000556210 ABCB6Q9NP58 842 aa16.46■□□□□ 0.22
CUX1-215ENST00000556210 IL17RBQ9NRM6 502 aa16.46■□□□□ 0.22
CUX1-215ENST00000556210 BARHL2Q9NY43 387 aa16.46■□□□□ 0.22
CUX1-215ENST00000556210 FAN1Q9Y2M0 1017 aa16.46■□□□□ 0.22
CUX1-215ENST00000556210 MED1Q15648 1581 aaPredicted RBP16.46■□□□□ 0.22
CUX1-215ENST00000556210 SMIM23A6NLE4 172 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 PPEF1O14829 653 aaPredicted RBP16.45■□□□□ 0.22
CUX1-215ENST00000556210 MOCS3O95396 460 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 TRIM14Q14142 442 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 KCTD19Q17RG1 926 aaPredicted RBP16.45■□□□□ 0.22
CUX1-215ENST00000556210 SLC30A10Q6XR72 485 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 MIGA2Q7L4E1 593 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 RGPD1P0DJD0 1748 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 A0A1B0GTH6 734 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 GOLGA6L10A6NI86 522 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 ORC4O43929 436 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 ICA1Q05084 483 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 C2orf54Q08AI8 447 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 KLHL30Q0D2K2 578 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 TTC31Q49AM3 519 aaPredicted RBP16.45■□□□□ 0.22
CUX1-215ENST00000556210 MICALL1Q8N3F8 863 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 GOLGA5Q8TBA6 731 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 DDX12PQ92771 950 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 LZTS2Q9BRK4 669 aa16.45■□□□□ 0.22
CUX1-215ENST00000556210 NHEJ1Q9H9Q4 299 aaPredicted RBP16.45■□□□□ 0.22
CUX1-215ENST00000556210 KIAA0754O94854 1291 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms