RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 AP3B2Q13367 1082 aa16.65■□□□□ 0.26
VPS33B-205ENST00000556096 MORC3Q14149 939 aa16.65■□□□□ 0.26
VPS33B-205ENST00000556096 NBPF12Q5TAG4 269 aaPredicted RBP16.65■□□□□ 0.26
VPS33B-205ENST00000556096 PDXDC2PQ6P474 469 aa16.65■□□□□ 0.26
VPS33B-205ENST00000556096 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.65■□□□□ 0.26
VPS33B-205ENST00000556096 FAM160B2Q86V87 743 aa16.65■□□□□ 0.26
VPS33B-205ENST00000556096 SPICE1Q8N0Z3 855 aa16.65■□□□□ 0.26
VPS33B-205ENST00000556096 MLKLQ8NB16 471 aa16.65■□□□□ 0.26
VPS33B-205ENST00000556096 ZNF408Q9H9D4 720 aa16.65■□□□□ 0.26
VPS33B-205ENST00000556096 CTNND1O60716 968 aaKnown RBP16.64■□□□□ 0.25
VPS33B-205ENST00000556096 PTMAP06454 111 aaKnown RBP16.64■□□□□ 0.25
VPS33B-205ENST00000556096 UBA7P41226 1012 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 ZNF75DP51815 510 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 DPYDQ12882 1025 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 CT47A1Q5JQC4 288 aaPredicted RBP16.64■□□□□ 0.25
VPS33B-205ENST00000556096 FAM83BQ5T0W9 1011 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 ISM2Q6H9L7 571 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 ZSCAN30Q86W11 494 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 GRAMD1CQ8IYS0 662 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 SMC1BQ8NDV3 1235 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 HOOK2Q96ED9 719 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 GSDMAQ96QA5 445 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 TRIM5Q9C035 493 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 DISC1Q9NRI5 854 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 DACH1Q9UI36 760 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 FZD1Q9UP38 647 aa16.64■□□□□ 0.25
VPS33B-205ENST00000556096 MEIS2O14770 477 aa16.63■□□□□ 0.25
VPS33B-205ENST00000556096 BMP6P22004 513 aa16.63■□□□□ 0.25
VPS33B-205ENST00000556096 USP11P51784 963 aa16.63■□□□□ 0.25
VPS33B-205ENST00000556096 TPM4P67936 248 aa16.63■□□□□ 0.25
VPS33B-205ENST00000556096 NCAPHQ15003 741 aa16.63■□□□□ 0.25
VPS33B-205ENST00000556096 RBM46Q8TBY0 533 aaKnown RBP16.63■□□□□ 0.25
VPS33B-205ENST00000556096 FEM1BQ9UK73 627 aa16.63■□□□□ 0.25
VPS33B-205ENST00000556096 PPP2R3BQ9Y5P8 575 aa16.63■□□□□ 0.25
VPS33B-205ENST00000556096 SSC5DA1L4H1 1573 aa16.63■□□□□ 0.25
VPS33B-205ENST00000556096 ITGBL1O95965 494 aaPredicted RBP16.62■□□□□ 0.25
VPS33B-205ENST00000556096 FOSP01100 380 aaPredicted RBP16.62■□□□□ 0.25
VPS33B-205ENST00000556096 CDC25BP30305 580 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 AFMP43652 599 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 FXR2P51116 673 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS33B-205ENST00000556096 PRKG1Q13976 671 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 CALCRLQ16602 461 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 DCAF15Q66K64 600 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 POTEDQ86YR6 584 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 IGSF22Q8N9C0 903 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 RANBP17Q9H2T7 1088 aaKnown RBP16.62■□□□□ 0.25
VPS33B-205ENST00000556096 CUEDC2Q9H467 287 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 DOCK1Q14185 1865 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 USP17L15C9J2P7 530 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 USP17L13C9JLJ4 530 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 USP17L11C9JVI0 530 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 USP17L18D6R9N7 530 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 USP17L22D6RA61 530 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 USP17L17D6RBQ6 530 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 USP17L19D6RCP7 530 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 USP17L20D6RJB6 530 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 GTPBP6O43824 516 aaPredicted RBP16.62■□□□□ 0.25
VPS33B-205ENST00000556096 TDP2O95551 362 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 TPM3P06753 285 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 CDC25AP30304 524 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 SNAP25P60880 206 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 USP17L24Q0WX57 530 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 PDIA5Q14554 519 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 KARSQ15046 597 aaKnown RBP16.62■□□□□ 0.25
VPS33B-205ENST00000556096 RRAGBQ5VZM2 374 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 USP17L6PQ6QN14 398 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 MOXD1Q6UVY6 613 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 CDCA5Q96FF9 252 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 MRFAP1L1Q96HT8 127 aa16.62■□□□□ 0.25
VPS33B-205ENST00000556096 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.62■□□□□ 0.25
VPS33B-205ENST00000556096 CYP3A7-CYP3A51PA0A087WV96 503 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 GOLGA6L6A8MZA4 724 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 PIK3CDO00329 1044 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 SLC37A4O43826 429 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 MYL1P05976 194 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 CYP3A7P24462 503 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 STAT6P42226 847 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 MYL5Q02045 173 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 CABP7Q86V35 215 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 LPAR1Q92633 364 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 ZNF341Q9BYN7 854 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 ANO3Q9BYT9 981 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 KIAA1683Q9H0B3 1180 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 MAGEF1Q9HAY2 307 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 ZNF112Q9UJU3 913 aa16.61■□□□□ 0.25
VPS33B-205ENST00000556096 PP2D1A8MPX8 630 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 TECP42680 631 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 TMEM266Q2M3C6 531 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 USH1GQ495M9 461 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 NAALADL2Q58DX5 795 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 CRYGNQ8WXF5 182 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 MBOAT7Q96N66 472 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 MTRQ99707 1265 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 RAB34Q9BZG1 259 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.6■□□□□ 0.25
VPS33B-205ENST00000556096 DDX25Q9UHL0 483 aaKnown RBP16.6■□□□□ 0.25
VPS33B-205ENST00000556096 ZKSCAN5Q9Y2L8 839 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 OTOFQ9HC10 1997 aa16.6■□□□□ 0.25
VPS33B-205ENST00000556096 TXKP42681 527 aa16.59■□□□□ 0.25
VPS33B-205ENST00000556096 SEMA3FQ13275 785 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms