RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RBPJLQ9UBG7 517 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 ZMYM6O95789 1325 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 KIAA0100Q14667 2235 aaKnown RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 MYH4Q9Y623 1939 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 TSPY2A6NKD2 308 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 USP17L15C9J2P7 530 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 USP17L13C9JLJ4 530 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 USP17L11C9JVI0 530 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 USP17L18D6R9N7 530 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 USP17L22D6RA61 530 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 USP17L17D6RBQ6 530 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 USP17L19D6RCP7 530 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 USP17L20D6RJB6 530 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 CCP110O43303 1012 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 DTNBO60941 627 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 BRD2P25440 801 aaKnown RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 USP17L24Q0WX57 530 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 CCDC34Q96HJ3 373 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 TCEANC2Q96MN5 208 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 NUP88Q99567 741 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 DEF6Q9H4E7 631 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 FBXO28Q9NVF7 368 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 NYAP2Q9P242 653 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 TFIP11Q9UBB9 837 aaKnown RBP8.68□□□□□ -1.02
LIMA1-216ENST00000552909 ADAM21Q9UKJ8 722 aa8.68□□□□□ -1.02
LIMA1-216ENST00000552909 RLFQ13129 1914 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 E7EWF7 191 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 F5H6K3 240 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 CTAGE5O15320 804 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 ORC4O43929 436 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 FMNL1O95466 1100 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-216ENST00000552909 NEDD4P46934 1319 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 ETF1P62495 437 aaKnown RBP8.67□□□□□ -1.02
LIMA1-216ENST00000552909 KLRC3Q07444 240 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 ST3GAL1Q11201 340 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 ME3Q16798 604 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 FAM110CQ1W6H9 321 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 AKNAD1Q5T1N1 836 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 SAMD1Q6SPF0 538 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-216ENST00000552909 STOX1Q6ZVD7 989 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 PACS2Q86VP3 889 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 LRRC47Q8N1G4 583 aaKnown RBP8.67□□□□□ -1.02
LIMA1-216ENST00000552909 DRC1Q96MC2 740 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 PAGR1Q9BTK6 254 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 TANGO6Q9C0B7 1094 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 ARFGAP3Q9NP61 516 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 DNAI1Q9UI46 699 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 PTPN22Q9Y2R2 807 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 TNRC18O15417 2968 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-216ENST00000552909 MGAMO43451 1857 aa8.67□□□□□ -1.02
LIMA1-216ENST00000552909 PLIN4Q96Q06 1357 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 SPDYE16A6NNV3 312 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-216ENST00000552909 CNMDO75829 334 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 TTLL1O95922 423 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 ATP2B1P20020 1258 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 SFPQP23246 707 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIMA1-216ENST00000552909 RPS6KB1P23443 525 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 GCLCP48506 637 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-216ENST00000552909 EVCP57679 992 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 FBXO46Q6PJ61 603 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-216ENST00000552909 MFSD6Q6ZSS7 791 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 RASGRP2Q7LDG7 609 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 DHX40Q8IX18 779 aaKnown RBP8.66□□□□□ -1.02
LIMA1-216ENST00000552909 NECAB1Q8N987 351 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 STAG1Q8WVM7 1258 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 PPM1EQ8WY54 764 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 MKL1Q969V6 931 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 PGBD1Q96JS3 809 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 ANO10Q9NW15 660 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 BTBD7Q9P203 1132 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 GABRQQ9UN88 632 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 STX8Q9UNK0 236 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 HPS5Q9UPZ3 1129 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 PTCH2Q9Y6C5 1203 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 URI1O94763 535 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-216ENST00000552909 SMC2O95347 1197 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 NDUFB10O96000 172 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 COG2Q14746 738 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 KIF22Q14807 665 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 PKN2Q16513 984 aaKnown RBP8.66□□□□□ -1.02
LIMA1-216ENST00000552909 FAM83BQ5T0W9 1011 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 GPR161Q8N6U8 529 aaKnown RBP8.66□□□□□ -1.02
LIMA1-216ENST00000552909 GPATCH11Q8N954 259 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 LPAR1Q92633 364 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 ZKSCAN3Q9BRR0 538 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 CARD6Q9BX69 1037 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 PORCNQ9H237 461 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 SH2D4AQ9H788 454 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 MORF4L1Q9UBU8 362 aa8.66□□□□□ -1.02
LIMA1-216ENST00000552909 CCDC85CA6NKD9 419 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 B4E1Z4 1266 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 FLOT1O75955 427 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 HMGB1P09429 215 aaKnown RBP8.65□□□□□ -1.02
LIMA1-216ENST00000552909 ERVK-9P63128 1117 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 ERVK-24P63145 666 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 PRKCZQ05513 592 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 IFFO2Q5TF58 517 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 DHX32Q7L7V1 743 aaKnown RBP8.65□□□□□ -1.02
LIMA1-216ENST00000552909 CHST3Q7LGC8 479 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 CEP57L1Q8IYX8 460 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms