RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 RANBP6O60518 1105 aaKnown RBP13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 CYP2C9P11712 490 aa13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 ALX1Q15699 326 aa13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 LRRFIP1Q32MZ4 808 aaKnown RBP13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 DUSP28Q4G0W2 176 aa13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 KIAA1211Q6ZU35 1233 aa13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 ZNF589Q86UQ0 364 aaPredicted RBP13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 DCAF4Q8WV16 495 aa13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 GAS2L1Q99501 681 aaPredicted RBP13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 TMEM47Q9BQJ4 181 aa13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 AP5M1Q9H0R1 490 aa13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 GBF1Q92538 1859 aa13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 ARHGEF15O94989 841 aa13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 FGAP02671 866 aa13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 EDNRBP24530 442 aa13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 PURAQ00577 322 aaKnown RBP13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 TTLL4Q14679 1199 aa13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 RAB30Q15771 203 aa13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 CCDC85BQ15834 202 aaPredicted RBP13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 CCDC96Q2M329 555 aa13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 SYDE2Q5VT97 1194 aa13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 SYMPKQ92797 1274 aaKnown RBP13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 COPS5Q92905 334 aa13.68□□□□□ -0.22
SMARCD1-208ENST00000550280 SNHG28P0DPA3 235 aa13.67□□□□□ -0.22
SMARCD1-208ENST00000550280 PDHBP11177 359 aa13.67□□□□□ -0.22
SMARCD1-208ENST00000550280 ASB2Q96Q27 587 aa13.67□□□□□ -0.22
SMARCD1-208ENST00000550280 WDR11Q9BZH6 1224 aa13.67□□□□□ -0.22
SMARCD1-208ENST00000550280 GPCPD1Q9NPB8 672 aa13.67□□□□□ -0.22
SMARCD1-208ENST00000550280 EPOPA6NHQ4 379 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 TNFRSF10AO00220 468 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 ZEB2O60315 1214 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 ARIH2O95376 493 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 TOP1P11387 765 aaKnown RBP13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 PDE1AP54750 535 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 PPP4R3BQ5MIZ7 849 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 TBC1D10CQ8IV04 446 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 ATXN2LQ8WWM7 1075 aaKnown RBP13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 EVI5LQ96CN4 794 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 CTAGE1Q96RT6 745 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 CPVLQ9H3G5 476 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 SLC28A3Q9HAS3 691 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 HELLSQ9NRZ9 838 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 TCP11L1Q9NUJ3 509 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 THEGQ9P2T0 379 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 MSRAQ9UJ68 235 aa13.66□□□□□ -0.22
SMARCD1-208ENST00000550280 TNKSO95271 1327 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 SCN10AQ9Y5Y9 1956 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 PTPDC1A2A3K4 754 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 RFXAPO00287 272 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 MYL3P08590 195 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 HSPD1P10809 573 aaKnown RBP13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 IGFBP4P22692 258 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 CALML3P27482 149 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 HAND2P61296 217 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 RPS6P62753 249 aaKnown RBP13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 ZNF543Q08ER8 600 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 NBPF20Q3BBV1 942 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 RRP12Q5JTH9 1297 aaKnown RBP13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 SPRED2Q7Z698 418 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 TBC1D5Q92609 795 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 SEZ6LQ9BYH1 1024 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 RAPGEFL1Q9UHV5 662 aa13.65□□□□□ -0.22
SMARCD1-208ENST00000550280 SCN5AQ14524 2016 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 NMIQ13287 307 aaPredicted RBP13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 GPNMBQ14956 572 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 ANKRD45Q5TZF3 282 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 PPP2R2DQ66LE6 453 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 DEFB128Q7Z7B8 93 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 OR6J1Q8NGC5 347 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 ADAMTS19Q8TE59 1207 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 TOMM22Q9NS69 142 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 ADD3Q9UEY8 706 aaKnown RBP13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 PCDHA11Q9Y5I1 949 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 SLC4A7Q9Y6M7 1214 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 ZMYM6O95789 1325 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 NEDD4P46934 1319 aa13.64□□□□□ -0.23
SMARCD1-208ENST00000550280 LOC102724159A0A0B4J2E5 919 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 A6NJR5 290 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 ZBBXA8MT70 800 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 GOLGA8HP0CJ92 632 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 ATP2A2P16615 1042 aaKnown RBP13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 PWP2Q15269 919 aaKnown RBP13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 MCMDC2Q4G0Z9 681 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 KRT40Q6A162 431 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 RNF207Q6ZRF8 634 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 NECAB3Q96P71 396 aaPredicted RBP13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 CRBNQ96SW2 442 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 MTG1Q9BT17 334 aaPredicted RBP13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 MTIF3Q9H2K0 278 aaKnown RBP13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 POLR3EQ9NVU0 708 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 COL20A1Q9P218 1284 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 MYO9BQ13459 2157 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 WDR19Q8NEZ3 1342 aa13.63□□□□□ -0.23
SMARCD1-208ENST00000550280 CA3P07451 260 aa13.62□□□□□ -0.23
SMARCD1-208ENST00000550280 CPT1AP50416 773 aa13.62□□□□□ -0.23
SMARCD1-208ENST00000550280 RRP1P56182 461 aaKnown RBP13.62□□□□□ -0.23
SMARCD1-208ENST00000550280 MRPS5P82675 430 aaKnown RBP13.62□□□□□ -0.23
SMARCD1-208ENST00000550280 TFF2Q03403 129 aa13.62□□□□□ -0.23
SMARCD1-208ENST00000550280 TCTN1Q2MV58 587 aa13.62□□□□□ -0.23
SMARCD1-208ENST00000550280 CCDC62Q6P9F0 684 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms