RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 KLRK1P26718 216 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 PRPHP41219 470 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 SND1Q7KZF4 910 aaKnown RBP eCLIP17.99■□□□□ 0.47
CUX1-213ENST00000549414 CLEC10AQ8IUN9 316 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 FAM178BQ8IXR5 827 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 HPS5Q9UPZ3 1129 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 SHPRHQ149N8 1683 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 RIMS1Q86UR5 1692 aaKnown RBP17.99■□□□□ 0.47
CUX1-213ENST00000549414 ZBED4O75132 1171 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 TUBBP07437 444 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 AK8Q96MA6 479 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 TMEM260Q9NX78 707 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 CTTNBP2NLQ9P2B4 639 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 SWAP70Q9UH65 585 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 OVOS2A0A0G2JMS6 1433 aa17.99■□□□□ 0.47
CUX1-213ENST00000549414 RICTORQ6R327 1708 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 LAD1O00515 517 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 ZBTB7AO95365 584 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 U2AF1L4Q8WU68 220 aaKnown RBP17.98■□□□□ 0.47
CUX1-213ENST00000549414 IVNS1ABPQ9Y6Y0 642 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 OAS2P29728 719 aaKnown RBP17.98■□□□□ 0.47
CUX1-213ENST00000549414 DPY19L2Q6NUT2 758 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 METTL16Q86W50 562 aaKnown RBP17.98■□□□□ 0.47
CUX1-213ENST00000549414 UBLCP1Q8WVY7 318 aaPredicted RBP17.98■□□□□ 0.47
CUX1-213ENST00000549414 SPATA31A1Q5TZJ5 1347 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 FLOT1O75955 427 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 USP17L15C9J2P7 530 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 USP17L13C9JLJ4 530 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 USP17L11C9JVI0 530 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 USP17L18D6R9N7 530 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 USP17L22D6RA61 530 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 USP17L17D6RBQ6 530 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 USP17L19D6RCP7 530 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 USP17L20D6RJB6 530 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 USP17L24Q0WX57 530 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 SMC1AQ14683 1233 aaKnown RBP17.98■□□□□ 0.47
CUX1-213ENST00000549414 GRIPAP1Q4V328 841 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 CC2D2BQ6DHV5 1058 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 USP17L6PQ6QN14 398 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 GSTA5Q7RTV2 222 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 SLFN12Q8IYM2 578 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 DPF2Q92785 391 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 COA1Q9GZY4 146 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 HAUS4Q9H6D7 363 aa17.98■□□□□ 0.47
CUX1-213ENST00000549414 SEC31AO94979 1220 aaKnown RBP17.97■□□□□ 0.47
CUX1-213ENST00000549414 GPR161Q8N6U8 529 aaKnown RBP17.97■□□□□ 0.47
CUX1-213ENST00000549414 PAGR1Q9BTK6 254 aa17.97■□□□□ 0.47
CUX1-213ENST00000549414 HPDP32754 393 aaPredicted RBP17.97■□□□□ 0.47
CUX1-213ENST00000549414 RASAL2Q9UJF2 1139 aa17.97■□□□□ 0.47
CUX1-213ENST00000549414 CCPG1Q9ULG6 757 aa17.97■□□□□ 0.47
CUX1-213ENST00000549414 TEX33O43247 280 aa17.97■□□□□ 0.47
CUX1-213ENST00000549414 NR2F2P24468 414 aa17.97■□□□□ 0.47
CUX1-213ENST00000549414 IQCB1Q15051 598 aa17.97■□□□□ 0.47
CUX1-213ENST00000549414 DHTKD1Q96HY7 919 aaPredicted RBP17.97■□□□□ 0.47
CUX1-213ENST00000549414 PI4KBQ9UBF8 816 aa17.97■□□□□ 0.47
CUX1-213ENST00000549414 GOLGA6L7A0A1B0GV03 622 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 BMP3P12645 472 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 EEF1GP26641 437 aaKnown RBP17.96■□□□□ 0.47
CUX1-213ENST00000549414 TUBB2AQ13885 445 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 SF3B3Q15393 1217 aaKnown RBP17.96■□□□□ 0.47
CUX1-213ENST00000549414 RPS6KA1Q15418 735 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 CCDC127Q96BQ5 260 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 TUBB2BQ9BVA1 445 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 TDRD3Q9H7E2 651 aaKnown RBP17.96■□□□□ 0.47
CUX1-213ENST00000549414 SPTLC3Q9NUV7 552 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 MYO1AQ9UBC5 1043 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 RWDD2AQ9UIY3 292 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 SIGLEC1Q9BZZ2 1709 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 BAZ2BQ9UIF8 2168 aaKnown RBP17.96■□□□□ 0.47
CUX1-213ENST00000549414 EFCAB8A8MWE9 144 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 CASP7P55210 303 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 CDC37Q16543 378 aaPredicted RBP17.96■□□□□ 0.47
CUX1-213ENST00000549414 LRCH2Q5VUJ6 765 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 PEX26Q7Z412 305 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 CCDC155Q8N6L0 562 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 KCNF1Q9H3M0 494 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 RABGAP1Q9Y3P9 1069 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 MROH7-TTC4A0A0A0MT08 1334 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 CLIC2O15247 247 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 GH2P01242 217 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 ST3GAL1Q11201 340 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 ARL6IP4Q66PJ3 421 aaKnown RBP17.96■□□□□ 0.47
CUX1-213ENST00000549414 IFT74Q96LB3 600 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 CUEDC2Q9H467 287 aa17.96■□□□□ 0.47
CUX1-213ENST00000549414 MRPL11Q9Y3B7 192 aaKnown RBP17.96■□□□□ 0.47
CUX1-213ENST00000549414 ZMYND10O75800 440 aa17.96■□□□□ 0.46
CUX1-213ENST00000549414 CCNE1P24864 410 aa17.96■□□□□ 0.46
CUX1-213ENST00000549414 GRIN1Q05586 938 aa17.96■□□□□ 0.46
CUX1-213ENST00000549414 NLRX1Q86UT6 975 aa17.96■□□□□ 0.46
CUX1-213ENST00000549414 C21orf2O43822 256 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 NPR1P16066 1061 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 RASSF7Q02833 373 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 KCNB2Q92953 911 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 PAIP2Q9BPZ3 127 aaKnown RBP17.95■□□□□ 0.46
CUX1-213ENST00000549414 PPP1R7Q15435 360 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 ODR4Q5SWX8 454 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 FAM76AQ8TAV0 307 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 COL4A3BPQ9Y5P4 624 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 STAT1P42224 750 aa17.95■□□□□ 0.46
CUX1-213ENST00000549414 COL9A3Q14050 684 aaPredicted RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms