RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 NCOA3Q9Y6Q9 1424 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 STK36Q9NRP7 1315 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 SART1O43290 800 aaKnown RBP8.56□□□□□ -1.04
VPS13D-211ENST00000543710 TBC1D8O95759 1140 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 PTPROQ16827 1216 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 HADHQ16836 314 aaKnown RBP8.56□□□□□ -1.04
VPS13D-211ENST00000543710 SLFNL1Q499Z3 407 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 ANKRD20A4Q4UJ75 823 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 ANKRD20A8PQ5CZ79 823 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 ANKRD20A2Q5SQ80 823 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 ANKRD20A1Q5TYW2 823 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 FAM160B1Q5W0V3 765 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 UPF1Q92900 1129 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS13D-211ENST00000543710 CACYBPQ9HB71 228 aaKnown RBP8.56□□□□□ -1.04
VPS13D-211ENST00000543710 VAT1LQ9HCJ6 419 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 SAR1BQ9Y6B6 198 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 CRCPO75575 148 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 KRT3P12035 628 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 MORC4Q8TE76 937 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 PPP4R1Q8TF05 950 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 RBSNQ9H1K0 784 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 RAB20Q9NX57 234 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 CCNT1O60563 726 aaKnown RBP8.56□□□□□ -1.04
VPS13D-211ENST00000543710 SURF1Q15526 300 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 SPATA1Q5VX52 437 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 SPATA5Q8NB90 893 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 XAGE2Q96GT9 111 aa8.56□□□□□ -1.04
VPS13D-211ENST00000543710 MRPL40Q9NQ50 206 aaKnown RBP8.56□□□□□ -1.04
VPS13D-211ENST00000543710 SPOPO43791 374 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 HAUS6Q7Z4H7 955 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 RPUSD2Q8IZ73 545 aaKnown RBP8.55□□□□□ -1.04
VPS13D-211ENST00000543710 PANX2Q96RD6 677 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 EIF2AQ9BY44 585 aaKnown RBP8.55□□□□□ -1.04
VPS13D-211ENST00000543710 POLR3EQ9NVU0 708 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 ATP8B3O60423 1300 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 TNS3Q68CZ2 1445 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 PRMT2P55345 433 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 DEUP1Q05D60 604 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 MORC3Q14149 939 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 UBE3CQ15386 1083 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 CCDC144CPQ8IYA2 1237 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 TRIM15Q9C019 465 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 KCNK9Q9NPC2 374 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 ARHGEF35A5YM69 484 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 E7EVH7 732 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 MBD4O95243 580 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 HAND2P61296 217 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 AMPD2Q01433 879 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 MCM6Q14566 821 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 ZYXQ15942 572 aaKnown RBP8.55□□□□□ -1.04
VPS13D-211ENST00000543710 CLEC4GQ6UXB4 293 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 CPXCR1Q8N123 301 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 NUDT12Q9BQG2 462 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 ADPGKQ9BRR6 497 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 COA1Q9GZY4 146 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 PASKQ96RG2 1323 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 A0A0G2JLW4 131 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 KCNJ18B7U540 433 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 ATP5HO75947 161 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 EPHB4P54760 987 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 KCNJ12Q14500 433 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 GKAP1Q5VSY0 366 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-211ENST00000543710 STYK1Q6J9G0 422 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 RINT1Q6NUQ1 792 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 GSDMAQ96QA5 445 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 LMCD1Q9NZU5 365 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 TRIM35Q9UPQ4 493 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 TRPC6Q9Y210 931 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 JRKLQ9Y4A0 524 aa8.55□□□□□ -1.04
VPS13D-211ENST00000543710 STMN1P16949 149 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 NFKBIAP25963 317 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 PRPF31Q8WWY3 499 aaKnown RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 DRC3Q9H069 523 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 TRAF5O00463 557 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 DNAJC8O75937 253 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 ANXA13P27216 316 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 CAV1Q03135 178 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 ZNF790Q6PG37 636 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 APLFQ8IW19 511 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 GPATCH11Q8N954 259 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 ZSCAN10Q96SZ4 725 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 RWDD2AQ9UIY3 292 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 TULP4Q9NRJ4 1543 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 GRID2IPA4D2P6 1211 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 CCDC169A6NNP5 214 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 OAS2P29728 719 aaKnown RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 STAT1P42224 750 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 USP50Q70EL3 339 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 URGCPQ8TCY9 931 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 IFT81Q8WYA0 676 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.54□□□□□ -1.048e-7■■■■■ 32.1
VPS13D-211ENST00000543710 MCUR1Q96AQ8 359 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 PAIP2Q9BPZ3 127 aaKnown RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 ZNF277Q9NRM2 450 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 HOXC10Q9NYD6 342 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 MRPL11Q9Y3B7 192 aaKnown RBP8.54□□□□□ -1.04
VPS13D-211ENST00000543710 MACROD2A1Z1Q3 448 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 NDUFAB1O14561 156 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 MYL3P08590 195 aa8.54□□□□□ -1.04
VPS13D-211ENST00000543710 RARBP10826 455 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms