RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PPP1R18Q6NYC8 613 aa18.34■□□□□ 0.53
COL4A1-204ENST00000543140 POTEAQ6S8J7 498 aa18.34■□□□□ 0.53
COL4A1-204ENST00000543140 CSRNP1Q96S65 589 aa18.34■□□□□ 0.53
COL4A1-204ENST00000543140 CUEDC2Q9H467 287 aa18.34■□□□□ 0.53
COL4A1-204ENST00000543140 RGS17Q9UGC6 210 aaPredicted RBP18.34■□□□□ 0.53
COL4A1-204ENST00000543140 MYL1P05976 194 aa18.33■□□□□ 0.53
COL4A1-204ENST00000543140 PBX1P40424 430 aa18.33■□□□□ 0.53
COL4A1-204ENST00000543140 TMEM266Q2M3C6 531 aa18.33■□□□□ 0.53
COL4A1-204ENST00000543140 PPP4R3BQ5MIZ7 849 aa18.33■□□□□ 0.53
COL4A1-204ENST00000543140 TOGARAM2Q6ZUX3 1019 aa18.33■□□□□ 0.53
COL4A1-204ENST00000543140 GIMAP8Q8ND71 665 aaPredicted RBP18.33■□□□□ 0.53
COL4A1-204ENST00000543140 HPS3Q969F9 1004 aa18.33■□□□□ 0.53
COL4A1-204ENST00000543140 ARID3AQ99856 593 aa18.33■□□□□ 0.53
COL4A1-204ENST00000543140 LIMA1Q9UHB6 759 aaKnown RBP18.33■□□□□ 0.53
COL4A1-204ENST00000543140 CLRN2A0PK11 232 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 TCP10L2B9ZVM9 353 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 F5H6K3 240 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 STX10O60499 249 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 GH2P01242 217 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 KLRC3Q07444 240 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 PDE4DQ08499 809 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 GRB10Q13322 594 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 ORC2Q13416 577 aaPredicted RBP18.33■□□□□ 0.52
COL4A1-204ENST00000543140 RRP1BQ14684 758 aaKnown RBP18.33■□□□□ 0.52
COL4A1-204ENST00000543140 CDC37Q16543 378 aaPredicted RBP18.33■□□□□ 0.52
COL4A1-204ENST00000543140 TMEM179Q6ZVK1 233 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 NUDT12Q9BQG2 462 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 DDX25Q9UHL0 483 aaKnown RBP18.33■□□□□ 0.52
COL4A1-204ENST00000543140 PPP2R2CQ9Y2T4 447 aa18.33■□□□□ 0.52
COL4A1-204ENST00000543140 KIF2AO00139 706 aaPredicted RBP18.32■□□□□ 0.52
COL4A1-204ENST00000543140 FCER1AP12319 257 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 COPB1P53618 953 aaKnown RBP18.32■□□□□ 0.52
COL4A1-204ENST00000543140 IKQ13123 557 aaPredicted RBP18.32■□□□□ 0.52
COL4A1-204ENST00000543140 IRF2BP1Q8IU81 584 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 REXO1L1PQ8IX06 675 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 SUPT20HQ8NEM7 779 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 DCAF4Q8WV16 495 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 DESI2Q9BSY9 194 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 MARCH6O60337 910 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 CASP14P31944 242 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 FXR2P51116 673 aaKnown RBP eCLIP18.32■□□□□ 0.52
COL4A1-204ENST00000543140 STK4Q13043 487 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 STIM1Q13586 685 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 MCM6Q14566 821 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 MTF1Q14872 753 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 CC2D2BQ6DHV5 1058 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 ANKRD20A12PQ8NF67 263 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 CDK5RAP3Q96JB5 506 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 PNMA5Q96PV4 448 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 EXOC1Q9NV70 894 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 RGPD3A6NKT7 1758 aaPredicted RBP18.32■□□□□ 0.52
COL4A1-204ENST00000543140 RGPD4Q7Z3J3 1758 aa18.32■□□□□ 0.52
COL4A1-204ENST00000543140 LRRC10BA6NIK2 292 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 H7C1D1 291 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 PSMA7O14818 248 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 CCP110O43303 1012 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 NPM3O75607 178 aaKnown RBP18.31■□□□□ 0.52
COL4A1-204ENST00000543140 TAL1P17542 331 aaPredicted RBP18.31■□□□□ 0.52
COL4A1-204ENST00000543140 TRIM47Q96LD4 638 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 C7orf25Q9BPX7 421 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 SRRTQ9BXP5 876 aaKnown RBP18.31■□□□□ 0.52
COL4A1-204ENST00000543140 MAGEF1Q9HAY2 307 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 ZNF277Q9NRM2 450 aaPredicted RBP18.31■□□□□ 0.52
COL4A1-204ENST00000543140 BLOC1S4Q9NUP1 217 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 SOWAHDA6NJG2 315 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 NDUFB10O96000 172 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 RBM26Q5T8P6 1007 aaKnown RBP18.31■□□□□ 0.52
COL4A1-204ENST00000543140 SPICE1Q8N0Z3 855 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 TTLL6Q8N841 843 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 SNX29Q8TEQ0 813 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 HAS1Q92839 578 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 DNAI1Q9UI46 699 aa18.31■□□□□ 0.52
COL4A1-204ENST00000543140 ZBTB12Q9Y330 459 aaPredicted RBP18.31■□□□□ 0.52
COL4A1-204ENST00000543140 PES1O00541 588 aaKnown RBP18.3■□□□□ 0.52
COL4A1-204ENST00000543140 ZSCAN12O43309 604 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 ENTPD3O75355 529 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 GYPCP04921 128 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 FXR1P51114 621 aaKnown RBP eCLIP18.3■□□□□ 0.52
COL4A1-204ENST00000543140 AMPD3Q01432 767 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 SPAG1Q07617 926 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 USH1GQ495M9 461 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 PPP4R3AQ6IN85 833 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 SV2BQ7L1I2 683 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 DYMQ7RTS9 669 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 RAB34Q9BZG1 259 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 CCDC47Q96A33 483 aaKnown RBP18.3■□□□□ 0.52
COL4A1-204ENST00000543140 PDCL3Q9H2J4 239 aa18.3■□□□□ 0.52
COL4A1-204ENST00000543140 ZNF215Q9UL58 517 aaPredicted RBP18.3■□□□□ 0.52
COL4A1-204ENST00000543140 ATF5Q9Y2D1 282 aaPredicted RBP18.3■□□□□ 0.52
COL4A1-204ENST00000543140 ARFGEF1Q9Y6D6 1849 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 PSMD14O00487 310 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 ETF1P62495 437 aaKnown RBP18.29■□□□□ 0.52
COL4A1-204ENST00000543140 UBXN1Q04323 297 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 NCBP1Q09161 790 aaKnown RBP18.29■□□□□ 0.52
COL4A1-204ENST00000543140 KRT79Q5XKE5 535 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 TRIM65Q6PJ69 517 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 KCNK18Q7Z418 384 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 FCHSD1Q86WN1 690 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 LARGE2Q8N3Y3 721 aa18.29■□□□□ 0.52
COL4A1-204ENST00000543140 PANX2Q96RD6 677 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms