RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 MINPP1Q9UNW1 487 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 FAM169AQ9Y6X4 670 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.68□□□□□ -1.34
PTPRD-214ENST00000540109 HAND2P61296 217 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 RIPPLY1Q0D2K3 151 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 GRAPQ13588 217 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 FLAD1Q8NFF5 587 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 GRAPLQ8TC17 118 aaPredicted RBP6.68□□□□□ -1.34
PTPRD-214ENST00000540109 IGDCC4Q8TDY8 1250 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 HOMER3Q9NSC5 361 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 GNPATO15228 680 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 RNF40O75150 1001 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 ETF1P62495 437 aaKnown RBP6.68□□□□□ -1.34
PTPRD-214ENST00000540109 RBM6P78332 1123 aaKnown RBP6.68□□□□□ -1.34
PTPRD-214ENST00000540109 CCDC96Q2M329 555 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 SND1Q7KZF4 910 aaKnown RBP eCLIP6.68□□□□□ -1.34
PTPRD-214ENST00000540109 LINC00301Q8NCQ3 95 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 CERKQ8TCT0 537 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.68□□□□□ -1.34
PTPRD-214ENST00000540109 SUGT1Q9Y2Z0 365 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 HNRNPCP07910 306 aaKnown RBP eCLIP6.68□□□□□ -1.34
PTPRD-214ENST00000540109 ATP2B4P23634 1241 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 PAX7P23759 505 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 ADD1P35611 737 aaKnown RBP6.68□□□□□ -1.34
PTPRD-214ENST00000540109 TAF11Q15544 211 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 LRRC43Q8N309 656 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 ZNF579Q8NAF0 562 aaKnown RBP6.68□□□□□ -1.34
PTPRD-214ENST00000540109 RBM17Q96I25 401 aaKnown RBP6.68□□□□□ -1.34
PTPRD-214ENST00000540109 SEC31BQ9NQW1 1179 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 SPTLC3Q9NUV7 552 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 ZNF711Q9Y462 761 aa6.68□□□□□ -1.34
PTPRD-214ENST00000540109 OPHN1O60890 802 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 DTNBO60941 627 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 GALNT17Q6IS24 598 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 HINFPQ9BQA5 517 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 ARMT1Q9H993 441 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 TMEM165Q9HC07 324 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 MYH14Q7Z406 1995 aaKnown RBP6.67□□□□□ -1.34
PTPRD-214ENST00000540109 KAT6BQ8WYB5 2073 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 TRAPPC10P48553 1259 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 PAK2Q13177 524 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 PLCB4Q15147 1175 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 TMTC1Q8IUR5 882 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 SMC1BQ8NDV3 1235 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 EIF2AQ9BY44 585 aaKnown RBP6.67□□□□□ -1.34
PTPRD-214ENST00000540109 LRRC2Q9BYS8 371 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 EIF3DO15371 548 aaKnown RBP eCLIP6.67□□□□□ -1.34
PTPRD-214ENST00000540109 AP1G2O75843 785 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 CRYMQ14894 314 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 FAM196AQ6ZSG2 479 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 WDR75Q8IWA0 830 aaKnown RBP6.67□□□□□ -1.34
PTPRD-214ENST00000540109 KIRREL3Q8IZU9 778 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 CNBD1Q8NA66 436 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 GJD4Q96KN9 370 aaPredicted RBP6.67□□□□□ -1.34
PTPRD-214ENST00000540109 MTRF1LQ9UGC7 380 aaKnown RBP6.67□□□□□ -1.34
PTPRD-214ENST00000540109 ROBO3Q96MS0 1386 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 LAMB1P07942 1786 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 TXNDC9O14530 226 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 BBOX1O75936 387 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 ATP5HO75947 161 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 FDPSP14324 419 aaKnown RBP6.67□□□□□ -1.34
PTPRD-214ENST00000540109 BCAMP50895 628 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 KRT40Q6A162 431 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 TAOK1Q7L7X3 1001 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 MIER3Q7Z3K6 550 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 IFT20Q8IY31 132 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 FBXO41Q8TF61 875 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 USP28Q96RU2 1077 aa6.67□□□□□ -1.34
PTPRD-214ENST00000540109 EPB41L4AQ9HCS5 686 aaPredicted RBP6.67□□□□□ -1.34
PTPRD-214ENST00000540109 GSTTP1A0A1W2PQM5 241 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 B4E1Z4 1266 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 SKAP2O75563 359 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 SYNE4Q8N205 404 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 UBLCP1Q8WVY7 318 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 ARHGEF2Q92974 986 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 RRP36Q96EU6 259 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 SH3GLB2Q9NR46 395 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 TAF1LQ8IZX4 1826 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 E7ENQ6 273 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 PRPF3O43395 683 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 POTEJP0CG39 1038 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 CALML3P27482 149 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 SLC30A9Q6PML9 568 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 INTS8Q75QN2 995 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 LRRC8AQ8IWT6 810 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 ZSCAN10Q96SZ4 725 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 IQCGQ9H095 443 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 CNOT10Q9H9A5 744 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 NDUFA13Q9P0J0 144 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 MYH13Q9UKX3 1938 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 hCG_1984214I3L0E3 225 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 STMN1P16949 149 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 ORC2Q13416 577 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 ACBD5Q5T8D3 534 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 PI16Q6UXB8 463 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 LCORLQ8N3X6 602 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 ZNF713Q8N859 430 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 ENGASEQ8NFI3 743 aa6.66□□□□□ -1.34
PTPRD-214ENST00000540109 RPGRQ92834 1020 aaKnown RBP6.66□□□□□ -1.34
PTPRD-214ENST00000540109 PGBD1Q96JS3 809 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms