RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 A0A1B0GTH6 734 aa23.2■■□□□ 1.3
SMPDL3A-203ENST00000539041 A0A1W2PRG0 241 aa23.2■■□□□ 1.3
SMPDL3A-203ENST00000539041 CXCL9Q07325 125 aa23.2■■□□□ 1.3
SMPDL3A-203ENST00000539041 IKQ13123 557 aaPredicted RBP23.2■■□□□ 1.3
SMPDL3A-203ENST00000539041 PDIA5Q14554 519 aa23.2■■□□□ 1.3
SMPDL3A-203ENST00000539041 KMT5BQ4FZB7 885 aa23.2■■□□□ 1.3
SMPDL3A-203ENST00000539041 KCND1Q9NSA2 647 aa23.2■■□□□ 1.3
SMPDL3A-203ENST00000539041 DDX25Q9UHL0 483 aaKnown RBP23.2■■□□□ 1.3
SMPDL3A-203ENST00000539041 GDAQ9Y2T3 454 aa23.2■■□□□ 1.3
SMPDL3A-203ENST00000539041 RHOBTB3O94955 611 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 NR1I3Q14994 352 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 FAM83AQ86UY5 434 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 FBXO11Q86XK2 927 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 NELFBQ8WX92 580 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 CCDC47Q96A33 483 aaKnown RBP23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 ZBTB7AO95365 584 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 KCNJ6P48051 423 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 TBX2Q13207 712 aaPredicted RBP23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 AP3B2Q13367 1082 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 DALRD3Q5D0E6 543 aaKnown RBP23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 MCTP2Q6DN12 878 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 CIAPIN1Q6FI81 312 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 CCDC112Q8NEF3 446 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 ZBED3Q96IU2 234 aaPredicted RBP23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 CTAGE1Q96RT6 745 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 C7orf25Q9BPX7 421 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 ANO3Q9BYT9 981 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 STK17AQ9UEE5 414 aa23.19■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP17L15C9J2P7 530 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP17L13C9JLJ4 530 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP17L11C9JVI0 530 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP17L18D6R9N7 530 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP17L22D6RA61 530 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP17L17D6RBQ6 530 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP17L19D6RCP7 530 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP17L20D6RJB6 530 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 TBC1D12O60347 775 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 POLD1P28340 1107 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 PRCPP42785 496 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 AMPD3Q01432 767 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP17L24Q0WX57 530 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 GRB10Q13322 594 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP17L6PQ6QN14 398 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 APTXQ7Z2E3 356 aaKnown RBP23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 ZBTB21Q9ULJ3 1066 aa23.18■■□□□ 1.3
SMPDL3A-203ENST00000539041 UQCRHLA0A096LP55 91 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 UQCRHP07919 91 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 SPECC1LQ69YQ0 1117 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 ADSSL1Q8N142 457 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 C16orf45Q96MC5 204 aaPredicted RBP23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 TRIM9Q9C026 710 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 TAOK3Q9H2K8 898 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 TMX2Q9Y320 296 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP11P51784 963 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 SNAP25P60880 206 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 STIM1Q13586 685 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 PTPN21Q16825 1174 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 CCAR2Q8N163 923 aaKnown RBP23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 CDK5RAP3Q96JB5 506 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 PNMA5Q96PV4 448 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 GOPCQ9HD26 462 aa23.17■■□□□ 1.3
SMPDL3A-203ENST00000539041 POTEMA6NI47 508 aa23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 MEIS2O14770 477 aa23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 ECE1P42892 770 aa23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 MMP14P50281 582 aa23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 SPAG1Q07617 926 aa23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 FILIP1LQ4L180 1135 aa23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 KRT79Q5XKE5 535 aa23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 GIMAP8Q8ND71 665 aaPredicted RBP23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 GTPBP4Q9BZE4 634 aaKnown RBP23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 TMEM39BQ9GZU3 492 aa23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 ADD3Q9UEY8 706 aaKnown RBP23.16■■□□□ 1.3
SMPDL3A-203ENST00000539041 USP27XA6NNY8 438 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 MARCH6O60337 910 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 TNNT1P13805 278 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 MOXD1Q6UVY6 613 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 SV2BQ7L1I2 683 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 SNX29Q8TEQ0 813 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 JDP2Q8WYK2 163 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 HAS1Q92839 578 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 MTFR1LQ9H019 292 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 BLOC1S4Q9NUP1 217 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 LIMA1Q9UHB6 759 aaKnown RBP23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 PRR12Q9ULL5 1215 aa23.15■■□□□ 1.3
SMPDL3A-203ENST00000539041 ASIC1P78348 528 aa23.14■■□□□ 1.3
SMPDL3A-203ENST00000539041 USH1GQ495M9 461 aa23.14■■□□□ 1.3
SMPDL3A-203ENST00000539041 MYRIPQ8NFW9 859 aa23.14■■□□□ 1.3
SMPDL3A-203ENST00000539041 ACER1Q8TDN7 264 aa23.14■■□□□ 1.3
SMPDL3A-203ENST00000539041 TMX1Q9H3N1 280 aa23.14■■□□□ 1.3
SMPDL3A-203ENST00000539041 EXOC1Q9NV70 894 aa23.14■■□□□ 1.3
SMPDL3A-203ENST00000539041 MAPK8IP1Q9UQF2 711 aa23.14■■□□□ 1.3
SMPDL3A-203ENST00000539041 CYP3A7-CYP3A51PA0A087WV96 503 aa23.14■■□□□ 1.29
SMPDL3A-203ENST00000539041 PSDA5PKW4 1024 aaPredicted RBP23.14■■□□□ 1.29
SMPDL3A-203ENST00000539041 COBLO75128 1261 aa23.14■■□□□ 1.29
SMPDL3A-203ENST00000539041 CYP3A7P24462 503 aa23.14■■□□□ 1.29
SMPDL3A-203ENST00000539041 STAT2P52630 851 aa23.14■■□□□ 1.29
SMPDL3A-203ENST00000539041 PDE4DQ08499 809 aa23.14■■□□□ 1.29
SMPDL3A-203ENST00000539041 CCDC125Q86Z20 511 aa23.14■■□□□ 1.29
SMPDL3A-203ENST00000539041 SPICE1Q8N0Z3 855 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms