RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 NRKQ7Z2Y5 1582 aa12.01□□□□□ -0.49
CLSTN3-207ENST00000537408 KRT86O43790 486 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 ENOX1Q8TC92 643 aaKnown RBP12□□□□□ -0.49
CLSTN3-207ENST00000537408 SLF1Q9BQI6 1058 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 DDX24Q9GZR7 859 aaKnown RBP eCLIP12□□□□□ -0.495e-6■■■■■ 34.6
CLSTN3-207ENST00000537408 DNM1LO00429 736 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 GSTA1P08263 222 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 LINGO3P0C6S8 592 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 TRIM29Q14134 588 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 TRIM14Q14142 442 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 CCDC43Q96MW1 224 aaKnown RBP12□□□□□ -0.49
CLSTN3-207ENST00000537408 PNPLA7Q6ZV29 1317 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 ENC1O14682 589 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 MYL1P05976 194 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 CCDC122Q5T0U0 273 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 ZSCAN29Q8IWY8 852 aaPredicted RBP12□□□□□ -0.49
CLSTN3-207ENST00000537408 NSUN7Q8NE18 718 aaKnown RBP12□□□□□ -0.49
CLSTN3-207ENST00000537408 SSH3Q8TE77 659 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 FBF1Q8TES7 1133 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 KDM6AO15550 1401 aaPredicted RBP12□□□□□ -0.49
CLSTN3-207ENST00000537408 SETD1AO15047 1707 aaKnown RBP12□□□□□ -0.49
CLSTN3-207ENST00000537408 VIMP08670 466 aaKnown RBP12□□□□□ -0.49
CLSTN3-207ENST00000537408 KRT83P78385 493 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 TBC1D9BQ66K14 1250 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 KIAA0825Q8IV33 1275 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 IFT20Q8IY31 132 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 CCDC197Q8NCU1 140 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 RRP36Q96EU6 259 aaKnown RBP12□□□□□ -0.49
CLSTN3-207ENST00000537408 C8orf76Q96K31 380 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 CEP131Q9UPN4 1083 aa12□□□□□ -0.49
CLSTN3-207ENST00000537408 N4BP3O15049 544 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 CHRNA5P30532 468 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 POLE2P56282 527 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 C2orf54Q08AI8 447 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 CCDC178Q5BJE1 867 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 ZIM3Q96PE6 472 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 OSBPL7Q9BZF2 842 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 PDLIM1O00151 329 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 OATP04181 439 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 POLR3DP05423 398 aaPredicted RBP11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 PAFAH1B1P43034 410 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 CTDP1Q9Y5B0 961 aaPredicted RBP11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 CLIC4Q9Y696 253 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 ANO1Q5XXA6 986 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 TRIM68Q6AZZ1 485 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 RINLQ6ZS11 566 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 NBPF15Q8N660 670 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 CAVIN3Q969G5 261 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 ZNF570Q96NI8 536 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 TMEM165Q9HC07 324 aa11.99□□□□□ -0.49
CLSTN3-207ENST00000537408 A6NHS1 94 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 IDEP14735 1019 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 CDC25CP30307 473 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 CASP14P31944 242 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 NR1I3Q14994 352 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 IMMTQ16891 758 aaKnown RBP11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 SYCP3Q8IZU3 236 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 MMGT1Q8N4V1 131 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 WDR66Q8TBY9 1149 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 PA2G4Q9UQ80 394 aaKnown RBP11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 GCOM1H8Y6P7 765 aaPredicted RBP11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 IDH1O75874 414 aaKnown RBP11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 MYZAPP0CAP1 466 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 TBC1D1Q86TI0 1168 aaPredicted RBP11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 TBC1D5Q92609 795 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 VCX3BQ9H321 246 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 ZNF408Q9H9D4 720 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 VCX3AQ9NNX9 186 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 HDAC6Q9UBN7 1215 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 L3MBTL1Q9Y468 752 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 A0A1B0GTH6 734 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 EVI5O60447 810 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 NPTXRO95502 500 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 GBP1P32455 592 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 PAPD7Q5XG87 772 aaKnown RBP11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 CCDC155Q8N6L0 562 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 IFT74Q96LB3 600 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 SLC5A4Q9NY91 659 aa11.98□□□□□ -0.49
CLSTN3-207ENST00000537408 ANO9A1A5B4 782 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 FLOT1O75955 427 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 ATP1A1P05023 1023 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 ATP2A2P16615 1042 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 ATP2B4P23634 1241 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 SH3BGRP55822 239 aaPredicted RBP11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 C8orf74Q6P047 294 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 TSHZ1Q6ZSZ6 1077 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 SMIM5Q71RC9 77 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 MAIP1Q8WWC4 291 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 C2CD2Q9Y426 696 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 NFAT5O94916 1531 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 SRGAP2O75044 1071 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 LDHCP07864 332 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 LMNB1P20700 586 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 RUFY4Q6ZNE9 571 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 ZBTB38Q8NAP3 1195 aaPredicted RBP11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 DNAAF2Q9NVR5 837 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 STIM2Q9P246 746 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 A0A0U1RQJ8 604 aa11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 TPD52L2O43399 206 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-207ENST00000537408 MATR3P43243 847 aaKnown RBP eCLIP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms