RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 INVSQ9Y283 1065 aa4.68□□□□□ -1.66
SKA3-207ENST00000536239 SMARCA5O60264 1052 aaPredicted RBP4.67□□□□□ -1.66
SKA3-207ENST00000536239 ZNF445P59923 1031 aa4.67□□□□□ -1.66
SKA3-207ENST00000536239 TRIM26Q12899 539 aaPredicted RBP4.67□□□□□ -1.66
SKA3-207ENST00000536239 SMAD4Q13485 552 aaKnown RBP4.67□□□□□ -1.66
SKA3-207ENST00000536239 SLC9A5Q14940 896 aa4.67□□□□□ -1.66
SKA3-207ENST00000536239 RGL3Q3MIN7 710 aa4.67□□□□□ -1.66
SKA3-207ENST00000536239 ANKRD39Q53RE8 183 aa4.67□□□□□ -1.66
SKA3-207ENST00000536239 NOL9Q5SY16 702 aaKnown RBP4.67□□□□□ -1.66
SKA3-207ENST00000536239 INTS3Q68E01 1043 aaKnown RBP4.67□□□□□ -1.66
SKA3-207ENST00000536239 CRIP3Q6Q6R5 217 aa4.67□□□□□ -1.66
SKA3-207ENST00000536239 LGI4Q8N135 537 aa4.67□□□□□ -1.66
SKA3-207ENST00000536239 BRF1Q92994 677 aa4.67□□□□□ -1.66
SKA3-207ENST00000536239 VTI1BQ9UEU0 232 aa4.67□□□□□ -1.66
SKA3-207ENST00000536239 ST6GALNAC2Q9UJ37 374 aa4.67□□□□□ -1.66
SKA3-207ENST00000536239 MCM4P33991 863 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 ZNF165P49910 485 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 GLB1LQ6UWU2 654 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 CABP7Q86V35 215 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 DDX11Q96FC9 970 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 PEX11GQ96HA9 241 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 GP6Q9HCN6 339 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 MRS2Q9HD23 443 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 UBP1Q9NZI7 540 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 NUDT5Q9UKK9 219 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 TSC22D4Q9Y3Q8 395 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 ZNF536O15090 1300 aa4.66□□□□□ -1.66
SKA3-207ENST00000536239 FAM86C2PA6NEL3 165 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 ZBTB7AO95365 584 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 ACRP10323 421 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 IFNGR1P15260 489 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 RPL13P26373 211 aaKnown RBP4.65□□□□□ -1.67
SKA3-207ENST00000536239 PMS1P54277 932 aaKnown RBP4.65□□□□□ -1.67
SKA3-207ENST00000536239 CDSNQ15517 529 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 DCAF15Q66K64 600 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 LIMS2Q7Z4I7 341 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 FIBCD1Q8N539 461 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 NETO2Q8NC67 525 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 SMARCC1Q92922 1105 aaPredicted RBP4.65□□□□□ -1.67
SKA3-207ENST00000536239 KISS1RQ969F8 398 aaPredicted RBP4.65□□□□□ -1.67
SKA3-207ENST00000536239 FBLN5Q9UBX5 448 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 SF3B6Q9Y3B4 125 aaKnown RBP4.65□□□□□ -1.67
SKA3-207ENST00000536239 FHOD1Q9Y613 1164 aa4.65□□□□□ -1.67
SKA3-207ENST00000536239 MROH6A6NGR9 719 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 FZD7O75084 574 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 CD3EP07766 207 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 CD247P20963 164 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 POU4F1Q01851 419 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 APOBRQ0VD83 1088 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 FAM26FQ5R3K3 315 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 AXDND1Q5T1B0 1012 aaPredicted RBP4.64□□□□□ -1.67
SKA3-207ENST00000536239 TDRD10Q5VZ19 366 aaKnown RBP4.64□□□□□ -1.67
SKA3-207ENST00000536239 BORAQ6PGQ7 559 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 FBXO33Q7Z6M2 555 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 FAM124AQ86V42 546 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 PPFIBP1Q86W92 1011 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 LZTR1Q8N653 840 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 GORASP1Q9BQQ3 440 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 C11orf84Q9BUA3 381 aaPredicted RBP4.64□□□□□ -1.67
SKA3-207ENST00000536239 ZNF747Q9BV97 191 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 ADAMTS1Q9UHI8 967 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 RWDD3Q9Y3V2 267 aa4.64□□□□□ -1.67
SKA3-207ENST00000536239 SUPT5HO00267 1087 aaKnown RBP4.63□□□□□ -1.67
SKA3-207ENST00000536239 PPP1R11O60927 126 aaPredicted RBP4.63□□□□□ -1.67
SKA3-207ENST00000536239 CYP2C8P10632 490 aa4.63□□□□□ -1.67
SKA3-207ENST00000536239 THBS2P35442 1172 aa4.63□□□□□ -1.67
SKA3-207ENST00000536239 CRB2Q5IJ48 1285 aa4.63□□□□□ -1.67
SKA3-207ENST00000536239 MCTP2Q6DN12 878 aa4.63□□□□□ -1.67
SKA3-207ENST00000536239 USP51Q70EK9 711 aa4.63□□□□□ -1.67
SKA3-207ENST00000536239 SLITRK4Q8IW52 837 aa4.63□□□□□ -1.67
SKA3-207ENST00000536239 NKD1Q969G9 470 aa4.63□□□□□ -1.67
SKA3-207ENST00000536239 PCDH18Q9HCL0 1135 aa4.63□□□□□ -1.67
SKA3-207ENST00000536239 C8BP07358 591 aa4.62□□□□□ -1.67
SKA3-207ENST00000536239 RCSD1Q6JBY9 416 aa4.62□□□□□ -1.67
SKA3-207ENST00000536239 CDK5RAP1Q96SZ6 601 aaKnown RBP4.62□□□□□ -1.67
SKA3-207ENST00000536239 MTA3Q9BTC8 594 aa4.62□□□□□ -1.67
SKA3-207ENST00000536239 PCED1AQ9H1Q7 454 aa4.62□□□□□ -1.67
SKA3-207ENST00000536239 VPS11Q9H270 941 aa4.62□□□□□ -1.67
SKA3-207ENST00000536239 NOL6Q9H6R4 1146 aaKnown RBP4.62□□□□□ -1.67
SKA3-207ENST00000536239 ZNF451Q9Y4E5 1061 aa4.62□□□□□ -1.67
SKA3-207ENST00000536239 A0A087WZG4 1122 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 TP53P04637 393 aaPredicted RBP4.61□□□□□ -1.67
SKA3-207ENST00000536239 ITGA4P13612 1032 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 ITGAEP38570 1179 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 TAGLNQ01995 201 aaKnown RBP4.61□□□□□ -1.67
SKA3-207ENST00000536239 ICAM4Q14773 271 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 SURF1Q15526 300 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 EEF1DP3Q658K8 133 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 TAB3Q8N5C8 712 aaPredicted RBP4.61□□□□□ -1.67
SKA3-207ENST00000536239 KYQ8NBH2 561 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 TXNDC5Q8NBS9 432 aaKnown RBP4.61□□□□□ -1.67
SKA3-207ENST00000536239 ZDHHC15Q96MV8 337 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 SYT3Q9BQG1 590 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 NT5C1AQ9BXI3 368 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 KLC2Q9H0B6 622 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 PPP4R1LQ9P1A2 415 aa4.61□□□□□ -1.67
SKA3-207ENST00000536239 PATL2C9JE40 543 aaKnown RBP4.6□□□□□ -1.67
SKA3-207ENST00000536239 LAMTOR5O43504 91 aa4.6□□□□□ -1.67
SKA3-207ENST00000536239 AMHP03971 560 aa4.6□□□□□ -1.67
SKA3-207ENST00000536239 C9orf131Q5VYM1 1079 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms