RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 METAP2P50579 478 aaKnown RBP eCLIP26.32■■□□□ 1.8
SFSWAP-204ENST00000535399 TRAF1Q13077 416 aa26.32■■□□□ 1.8
SFSWAP-204ENST00000535399 ARMCX2Q7L311 632 aa26.32■■□□□ 1.8
SFSWAP-204ENST00000535399 MCF2L2Q86YR7 1114 aa26.32■■□□□ 1.8
SFSWAP-204ENST00000535399 CCDC82Q8N4S0 544 aa26.32■■□□□ 1.8
SFSWAP-204ENST00000535399 CDKN2AIPQ9NXV6 580 aaPredicted RBP26.32■■□□□ 1.8
SFSWAP-204ENST00000535399 ZNF865P0CJ78 1059 aaPredicted RBP26.31■■□□□ 1.8
SFSWAP-204ENST00000535399 CNGA1P29973 690 aa26.31■■□□□ 1.8
SFSWAP-204ENST00000535399 DDX20Q9UHI6 824 aaKnown RBP26.31■■□□□ 1.8
SFSWAP-204ENST00000535399 CNTNAP5Q8WYK1 1306 aa26.31■■□□□ 1.8
SFSWAP-204ENST00000535399 ASB14A6NK59 587 aa26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 SEPT4O43236 478 aa26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 TFRCP02786 760 aaKnown RBP26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 ADD1P35611 737 aaKnown RBP26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 GHRHRQ02643 423 aa26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 PPP2R5BQ15173 497 aa26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 SYTL5Q8TDW5 730 aaPredicted RBP26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 MORC4Q8TE76 937 aa26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 SEC63Q9UGP8 760 aaKnown RBP26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 CNPY2Q9Y2B0 182 aa26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 DDX49Q9Y6V7 483 aaKnown RBP26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 PLXNA1Q9UIW2 1896 aa26.3■■□□□ 1.8
SFSWAP-204ENST00000535399 hCG_1642624A0A1W2PR95 340 aa26.29■■□□□ 1.8
SFSWAP-204ENST00000535399 CAPN2P17655 700 aa26.29■■□□□ 1.8
SFSWAP-204ENST00000535399 PDIA3P30101 505 aaKnown RBP26.29■■□□□ 1.8
SFSWAP-204ENST00000535399 ALDH5A1P51649 535 aaPredicted RBP26.29■■□□□ 1.8
SFSWAP-204ENST00000535399 LARP6Q9BRS8 491 aaKnown RBP26.29■■□□□ 1.8
SFSWAP-204ENST00000535399 KATNBL1Q9H079 304 aa26.29■■□□□ 1.8
SFSWAP-204ENST00000535399 COL20A1Q9P218 1284 aa26.29■■□□□ 1.8
SFSWAP-204ENST00000535399 ADD3Q9UEY8 706 aaKnown RBP26.29■■□□□ 1.8
SFSWAP-204ENST00000535399 OGDHLQ9ULD0 1010 aa26.29■■□□□ 1.8
SFSWAP-204ENST00000535399 MSCO60682 206 aa26.28■■□□□ 1.8
SFSWAP-204ENST00000535399 HSD17B4P51659 736 aa26.28■■□□□ 1.8
SFSWAP-204ENST00000535399 ACVR2BQ13705 512 aa26.28■■□□□ 1.8
SFSWAP-204ENST00000535399 ALDH8A1Q9H2A2 487 aaPredicted RBP26.28■■□□□ 1.8
SFSWAP-204ENST00000535399 LOC102724159A0A0B4J2E5 919 aa26.27■■□□□ 1.8
SFSWAP-204ENST00000535399 CCDC196A0A1B0GTZ2 297 aa26.27■■□□□ 1.8
SFSWAP-204ENST00000535399 CFBP00751 764 aa26.27■■□□□ 1.8
SFSWAP-204ENST00000535399 PWP2Q15269 919 aaKnown RBP26.27■■□□□ 1.8
SFSWAP-204ENST00000535399 UBE2Q1Q7Z7E8 422 aa26.27■■□□□ 1.8
SFSWAP-204ENST00000535399 DNERQ8NFT8 737 aa26.27■■□□□ 1.8
SFSWAP-204ENST00000535399 ABHD16BQ9H3Z7 469 aa26.27■■□□□ 1.8
SFSWAP-204ENST00000535399 ZHX1Q9UKY1 873 aaPredicted RBP26.27■■□□□ 1.8
SFSWAP-204ENST00000535399 SAMD3Q8N6K7 520 aa26.26■■□□□ 1.79
SFSWAP-204ENST00000535399 ZNF274Q96GC6 653 aaPredicted RBP26.26■■□□□ 1.79
SFSWAP-204ENST00000535399 TAAR1Q96RJ0 339 aa26.26■■□□□ 1.79
SFSWAP-204ENST00000535399 LCTP09848 1927 aa26.26■■□□□ 1.79
SFSWAP-204ENST00000535399 EDNRBP24530 442 aa26.25■■□□□ 1.79
SFSWAP-204ENST00000535399 MNX1P50219 401 aaPredicted RBP26.25■■□□□ 1.79
SFSWAP-204ENST00000535399 ANO1Q5XXA6 986 aa26.25■■□□□ 1.79
SFSWAP-204ENST00000535399 MAP3K20Q9NYL2 800 aaKnown RBP26.25■■□□□ 1.79
SFSWAP-204ENST00000535399 V9GY48 417 aaPredicted RBP26.25■■□□□ 1.79
SFSWAP-204ENST00000535399 FARP2O94887 1054 aaPredicted RBP26.24■■□□□ 1.79
SFSWAP-204ENST00000535399 AKR1A1P14550 325 aa26.24■■□□□ 1.79
SFSWAP-204ENST00000535399 CCT2P78371 535 aaKnown RBP26.24■■□□□ 1.79
SFSWAP-204ENST00000535399 ANKLE1Q8NAG6 615 aa26.24■■□□□ 1.79
SFSWAP-204ENST00000535399 NCOA5Q9HCD5 579 aaKnown RBP26.24■■□□□ 1.79
SFSWAP-204ENST00000535399 FAM184BQ9ULE4 1060 aa26.24■■□□□ 1.79
SFSWAP-204ENST00000535399 MKI67P46013 3256 aaKnown RBP26.23■■□□□ 1.79
SFSWAP-204ENST00000535399 GCOM1H8Y6P7 765 aaPredicted RBP26.23■■□□□ 1.79
SFSWAP-204ENST00000535399 POLR2MP0CAP2 368 aa26.23■■□□□ 1.79
SFSWAP-204ENST00000535399 HOXA13P31271 388 aaPredicted RBP26.23■■□□□ 1.79
SFSWAP-204ENST00000535399 NTRK3Q16288 839 aa26.23■■□□□ 1.79
SFSWAP-204ENST00000535399 C22orf23Q9BZE7 217 aa26.23■■□□□ 1.79
SFSWAP-204ENST00000535399 MYH6P13533 1939 aa26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 AK2P54819 239 aa26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 MLLT1Q03111 559 aaPredicted RBP26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 CCDC144BQ3MJ40 725 aa26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 WWC2Q6AWC2 1192 aa26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 EEPD1Q7L9B9 569 aa26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 HEATR3Q7Z4Q2 680 aa26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 FBXO16Q8IX29 292 aaPredicted RBP26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 NSUN6Q8TEA1 469 aaKnown RBP26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 GPKOWQ92917 476 aaPredicted RBP eCLIP26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 LENG1Q96BZ8 264 aaPredicted RBP26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 RMDN3Q96TC7 470 aa26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 KIF2CQ99661 725 aa26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 VTA1Q9NP79 307 aa26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 TPCN1Q9ULQ1 816 aa26.22■■□□□ 1.79
SFSWAP-204ENST00000535399 RBM25P49756 843 aaKnown RBP26.21■■□□□ 1.79
SFSWAP-204ENST00000535399 TAPT1Q6NXT6 567 aa26.21■■□□□ 1.79
SFSWAP-204ENST00000535399 DIS3LQ8TF46 1054 aaKnown RBP26.21■■□□□ 1.79
SFSWAP-204ENST00000535399 ADCY6O43306 1168 aa26.2■■□□□ 1.78
SFSWAP-204ENST00000535399 RARBP10826 455 aa26.2■■□□□ 1.78
SFSWAP-204ENST00000535399 IFNAR1P17181 557 aa26.2■■□□□ 1.78
SFSWAP-204ENST00000535399 NEK4P51957 841 aa26.2■■□□□ 1.78
SFSWAP-204ENST00000535399 ANKRD1Q15327 319 aa26.2■■□□□ 1.78
SFSWAP-204ENST00000535399 PXMP2Q9NR77 195 aa26.2■■□□□ 1.78
SFSWAP-204ENST00000535399 PDGFCQ9NRA1 345 aa26.2■■□□□ 1.78
SFSWAP-204ENST00000535399 MCM3APO60318 1980 aa26.19■■□□□ 1.78
SFSWAP-204ENST00000535399 PRPF3O43395 683 aaKnown RBP26.19■■□□□ 1.78
SFSWAP-204ENST00000535399 EIF2AK2P19525 551 aaKnown RBP26.19■■□□□ 1.78
SFSWAP-204ENST00000535399 PDE4DQ08499 809 aa26.19■■□□□ 1.78
SFSWAP-204ENST00000535399 STK3Q13188 491 aa26.19■■□□□ 1.78
SFSWAP-204ENST00000535399 ARHGEF16Q5VV41 709 aa26.19■■□□□ 1.78
SFSWAP-204ENST00000535399 TYW1BQ6NUM6 668 aa26.19■■□□□ 1.78
SFSWAP-204ENST00000535399 PHKBQ93100 1093 aa26.19■■□□□ 1.78
SFSWAP-204ENST00000535399 IWS1Q96ST2 819 aa26.19■■□□□ 1.78
SFSWAP-204ENST00000535399 MPHOSPH6Q99547 160 aaKnown RBP26.19■■□□□ 1.78
SFSWAP-204ENST00000535399 C11orf97A0A1B0GVM6 126 aaPredicted RBP26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms