RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 ZYXQ15942 572 aaKnown RBP7.87□□□□□ -1.15
SYNE1-232ENST00000535081 BCAS3Q9H6U6 928 aa7.87□□□□□ -1.15
SYNE1-232ENST00000535081 ITGB3P05106 788 aa7.86□□□□□ -1.15
SYNE1-232ENST00000535081 ADAM17P78536 824 aa7.86□□□□□ -1.15
SYNE1-232ENST00000535081 RCSD1Q6JBY9 416 aa7.86□□□□□ -1.15
SYNE1-232ENST00000535081 SMARCC2Q8TAQ2 1214 aa7.86□□□□□ -1.15
SYNE1-232ENST00000535081 BCL2L13Q9BXK5 485 aa7.86□□□□□ -1.15
SYNE1-232ENST00000535081 NTMQ9P121 344 aa7.86□□□□□ -1.15
SYNE1-232ENST00000535081 A0A087WZG4 1122 aa7.85□□□□□ -1.15
SYNE1-232ENST00000535081 GUCY2CP25092 1073 aa7.85□□□□□ -1.15
SYNE1-232ENST00000535081 TRIM26Q12899 539 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-232ENST00000535081 EEF1DP3Q658K8 133 aa7.85□□□□□ -1.15
SYNE1-232ENST00000535081 UNC5AQ6ZN44 842 aa7.85□□□□□ -1.15
SYNE1-232ENST00000535081 NETO2Q8NC67 525 aa7.85□□□□□ -1.15
SYNE1-232ENST00000535081 CPA5Q8WXQ8 436 aa7.85□□□□□ -1.15
SYNE1-232ENST00000535081 NOX5Q96PH1 765 aa7.85□□□□□ -1.15
SYNE1-232ENST00000535081 SMPD4Q9NXE4 827 aa7.85□□□□□ -1.15
SYNE1-232ENST00000535081 FBLN5Q9UBX5 448 aa7.85□□□□□ -1.15
SYNE1-232ENST00000535081 CBFA2T2O43439 604 aa7.84□□□□□ -1.15
SYNE1-232ENST00000535081 SARSP49591 514 aaKnown RBP7.84□□□□□ -1.15
SYNE1-232ENST00000535081 TCEAL1Q15170 157 aa7.84□□□□□ -1.15
SYNE1-232ENST00000535081 ZNF326Q5BKZ1 582 aaKnown RBP7.84□□□□□ -1.15
SYNE1-232ENST00000535081 KRTAP5-3Q6L8H2 238 aa7.84□□□□□ -1.15
SYNE1-232ENST00000535081 LZTR1Q8N653 840 aa7.84□□□□□ -1.15
SYNE1-232ENST00000535081 GIPC2Q8TF65 315 aa7.84□□□□□ -1.15
SYNE1-232ENST00000535081 RNF34Q969K3 372 aa7.84□□□□□ -1.15
SYNE1-232ENST00000535081 PEX11GQ96HA9 241 aa7.84□□□□□ -1.15
SYNE1-232ENST00000535081 BCL11AQ9H165 835 aa7.84□□□□□ -1.15
SYNE1-232ENST00000535081 NUDT5Q9UKK9 219 aa7.84□□□□□ -1.15
SYNE1-232ENST00000535081 ZNF214Q9UL59 606 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-232ENST00000535081 RWDD3Q9Y3V2 267 aa7.84□□□□□ -1.15
SYNE1-232ENST00000535081 PDIA4P13667 645 aaKnown RBP7.83□□□□□ -1.16
SYNE1-232ENST00000535081 TNFRSF1AP19438 455 aa7.83□□□□□ -1.16
SYNE1-232ENST00000535081 PPP2R5DQ14738 602 aa7.83□□□□□ -1.16
SYNE1-232ENST00000535081 SLC9A5Q14940 896 aa7.83□□□□□ -1.16
SYNE1-232ENST00000535081 FBXW10Q5XX13 1052 aa7.83□□□□□ -1.16
SYNE1-232ENST00000535081 RUFY4Q6ZNE9 571 aa7.83□□□□□ -1.16
SYNE1-232ENST00000535081 ZNF761Q86XN6 746 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-232ENST00000535081 RBBP8NLQ8NC74 664 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-232ENST00000535081 RBM15Q96T37 977 aaKnown RBP eCLIP7.83□□□□□ -1.16
SYNE1-232ENST00000535081 SPATA6Q9NWH7 488 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-232ENST00000535081 DIS3Q9Y2L1 958 aaKnown RBP7.83□□□□□ -1.16
SYNE1-232ENST00000535081 STXBP3O00186 592 aa7.82□□□□□ -1.16
SYNE1-232ENST00000535081 AURKAO14965 403 aa7.82□□□□□ -1.16
SYNE1-232ENST00000535081 CACNB2Q08289 660 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-232ENST00000535081 ZBTB8AQ96BR9 441 aa7.82□□□□□ -1.16
SYNE1-232ENST00000535081 MCMBPQ9BTE3 642 aa7.82□□□□□ -1.16
SYNE1-232ENST00000535081 WHRNQ9P202 907 aa7.82□□□□□ -1.16
SYNE1-232ENST00000535081 TTLL7Q6ZT98 887 aa7.81□□□□□ -1.16
SYNE1-232ENST00000535081 ADCY4Q8NFM4 1077 aa7.81□□□□□ -1.16
SYNE1-232ENST00000535081 HAUS7Q99871 368 aa7.81□□□□□ -1.16
SYNE1-232ENST00000535081 PPT2Q9UMR5 302 aa7.81□□□□□ -1.16
SYNE1-232ENST00000535081 ZBTB7AO95365 584 aa7.8□□□□□ -1.16
SYNE1-232ENST00000535081 TMEM87AQ8NBN3 555 aa7.8□□□□□ -1.16
SYNE1-232ENST00000535081 ADAMTS17Q8TE56 1095 aa7.8□□□□□ -1.16
SYNE1-232ENST00000535081 GULP1Q9UBP9 304 aa7.8□□□□□ -1.16
SYNE1-232ENST00000535081 MATN3O15232 486 aa7.79□□□□□ -1.16
SYNE1-232ENST00000535081 AKAP8O43823 692 aaKnown RBP7.79□□□□□ -1.16
SYNE1-232ENST00000535081 SEPHS1P49903 392 aa7.79□□□□□ -1.16
SYNE1-232ENST00000535081 ZXDAP98168 799 aa7.79□□□□□ -1.16
SYNE1-232ENST00000535081 SMAD4Q13485 552 aaKnown RBP7.79□□□□□ -1.16
SYNE1-232ENST00000535081 WWC2Q6AWC2 1192 aa7.79□□□□□ -1.16
SYNE1-232ENST00000535081 LINC00482Q8N8I6 264 aa7.79□□□□□ -1.16
SYNE1-232ENST00000535081 DDX11Q96FC9 970 aa7.79□□□□□ -1.16
SYNE1-232ENST00000535081 MTA3Q9BTC8 594 aa7.79□□□□□ -1.16
SYNE1-232ENST00000535081 KRTAP3-1Q9BYR8 98 aa7.79□□□□□ -1.16
SYNE1-232ENST00000535081 BACE2Q9Y5Z0 518 aa7.79□□□□□ -1.16
SYNE1-232ENST00000535081 LTBP3Q9NS15 1303 aa7.78□□□□□ -1.16
SYNE1-232ENST00000535081 SMARCA5O60264 1052 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-232ENST00000535081 PPP1R11O60927 126 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-232ENST00000535081 CYP2C8P10632 490 aa7.78□□□□□ -1.16
SYNE1-232ENST00000535081 LDLRAD1Q5T700 205 aa7.78□□□□□ -1.16
SYNE1-232ENST00000535081 CPZQ66K79 652 aa7.78□□□□□ -1.16
SYNE1-232ENST00000535081 TTC9BQ8N6N2 239 aa7.78□□□□□ -1.16
SYNE1-232ENST00000535081 KLHL25Q9H0H3 589 aa7.78□□□□□ -1.16
SYNE1-232ENST00000535081 GBP3Q9H0R5 595 aa7.78□□□□□ -1.16
SYNE1-232ENST00000535081 VAMP4O75379 141 aa7.77□□□□□ -1.17
SYNE1-232ENST00000535081 ZNF76P36508 570 aa7.77□□□□□ -1.17
SYNE1-232ENST00000535081 DPY19L1Q2PZI1 675 aa7.77□□□□□ -1.17
SYNE1-232ENST00000535081 CPNE8Q86YQ8 564 aa7.77□□□□□ -1.17
SYNE1-232ENST00000535081 LOXL4Q96JB6 756 aa7.77□□□□□ -1.17
SYNE1-232ENST00000535081 SAMD11Q96NU1 681 aa7.77□□□□□ -1.17
SYNE1-232ENST00000535081 C2orf71A6NGG8 1288 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 C1QTNF3-AMACRE9PGA6 284 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 PLATP00750 562 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 C8BP07358 591 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 ZNF20P17024 532 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 GNPTABQ3T906 1256 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 TBC1D10BQ4KMP7 808 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-232ENST00000535081 ZNF394Q53GI3 561 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 HEATR6Q6AI08 1181 aaKnown RBP7.76□□□□□ -1.17
SYNE1-232ENST00000535081 USP33Q8TEY7 942 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 C8orf49Q96NF6 230 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 GORASP1Q9BQQ3 440 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 C1QTNF3Q9BXJ4 246 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 CGGBP1Q9UFW8 167 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-232ENST00000535081 PCDHGB7Q9Y5F8 929 aa7.76□□□□□ -1.17
SYNE1-232ENST00000535081 TRBV23OR9-2A0A075B6M9 112 aa7.75□□□□□ -1.17
SYNE1-232ENST00000535081 NPHP3-ACAD11A0A0J9YXS1 232 aa7.75□□□□□ -1.17
SYNE1-232ENST00000535081 PAMP19021 973 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms