RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 LINC01599Q8WXQ3 324 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 KANSL2Q9H9L4 492 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 TMEM260Q9NX78 707 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 COL4A3BPQ9Y5P4 624 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 MYO1BO43795 1136 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 ADCY3O60266 1144 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 NPHS1O60500 1241 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 DIAPH1O60610 1272 aaKnown RBP4.86□□□□□ -1.63
CSMD3-210ENST00000534172 SCRN1Q12765 414 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 LAPTM5Q13571 262 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 ZNF574Q6ZN55 896 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-210ENST00000534172 MAMDC2Q7Z304 686 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-210ENST00000534172 JAMLQ86YT9 394 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 FLAD1Q8NFF5 587 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 NLGN2Q8NFZ4 835 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 SH3TC2Q8TF17 1288 aa4.86□□□□□ -1.63
CSMD3-210ENST00000534172 MRPL4Q9BYD3 311 aaKnown RBP4.86□□□□□ -1.63
CSMD3-210ENST00000534172 NPHP3-ACAD11A0A0J9YXS1 232 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 TMEM82A0PJX8 343 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 WASH4PA8MWX3 477 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 STXBP3O00186 592 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 FKTNO75072 461 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 ZGLP1P0C6A0 271 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 FAM153BP0C7A2 387 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 NOL8Q76FK4 1167 aaKnown RBP4.85□□□□□ -1.63
CSMD3-210ENST00000534172 WFDC3Q8IUB2 231 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 LILRB2Q8N423 598 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 IER2Q9BTL4 223 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 SLKQ9H2G2 1235 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-210ENST00000534172 PCDH12Q9NPG4 1184 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 AP5S1Q9NUS5 200 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 FANCLQ9NW38 375 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 A0A1W2PQ27 194 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 A0A1W2PQ64 194 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 A0A1W2PQC6 194 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 A0A1W2PQD8 194 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 NRDCO43847 1150 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 HPXP02790 462 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 CENPBP07199 599 aaPredicted RBP4.85□□□□□ -1.63
CSMD3-210ENST00000534172 ECI1P42126 302 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 GABREP78334 506 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 TCEA2Q15560 299 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 NPLOC4Q8TAT6 608 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 DIO2Q92813 273 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 ERVK13-1Q9NX77 482 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 KLHL42Q9P2K6 505 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 MINPP1Q9UNW1 487 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 PTCH2Q9Y6C5 1203 aa4.85□□□□□ -1.63
CSMD3-210ENST00000534172 ADGRL1O94910 1474 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 FADS2P1A8MWK0 482 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 AQP7O14520 342 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 DNAJC6O75061 913 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 CDC45O75419 566 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 LTBRP36941 435 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 ZNF792Q3KQV3 632 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 SLC35F1Q5T1Q4 408 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 ATG4DQ86TL0 474 aaPredicted RBP4.84□□□□□ -1.63
CSMD3-210ENST00000534172 ADAMTS10Q9H324 1103 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 RC3H2Q9HBD1 1191 aaKnown RBP4.84□□□□□ -1.63
CSMD3-210ENST00000534172 SPC25Q9HBM1 224 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 METTL14Q9HCE5 456 aaKnown RBP4.84□□□□□ -1.63
CSMD3-210ENST00000534172 CRTAC1Q9NQ79 661 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 MBNL3Q9NUK0 354 aaKnown RBP4.84□□□□□ -1.63
CSMD3-210ENST00000534172 TAF6LQ9Y6J9 622 aa4.84□□□□□ -1.63
CSMD3-210ENST00000534172 PLD2O14939 933 aa4.84□□□□□ -1.64
CSMD3-210ENST00000534172 RFPL3O75679 317 aa4.84□□□□□ -1.64
CSMD3-210ENST00000534172 IFNGR1P15260 489 aa4.84□□□□□ -1.64
CSMD3-210ENST00000534172 L1CAMP32004 1257 aa4.84□□□□□ -1.64
CSMD3-210ENST00000534172 FNDC3BQ53EP0 1204 aaKnown RBP4.84□□□□□ -1.64
CSMD3-210ENST00000534172 C16orf86Q6ZW13 317 aa4.84□□□□□ -1.64
CSMD3-210ENST00000534172 OSBP2Q969R2 916 aa4.84□□□□□ -1.64
CSMD3-210ENST00000534172 G6PC3Q9BUM1 346 aa4.84□□□□□ -1.64
CSMD3-210ENST00000534172 GPR27Q9NS67 375 aa4.84□□□□□ -1.64
CSMD3-210ENST00000534172 CTNND2Q9UQB3 1225 aa4.84□□□□□ -1.64
CSMD3-210ENST00000534172 MRPS23Q9Y3D9 190 aaKnown RBP4.84□□□□□ -1.64
CSMD3-210ENST00000534172 DLX3O60479 287 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 THBDP07204 575 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 RNASE1P07998 156 aaKnown RBP4.83□□□□□ -1.64
CSMD3-210ENST00000534172 CD96P40200 585 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 ARL4AP40617 200 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 RTP1P59025 263 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 PPIL6Q8IXY8 311 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.83□□□□□ -1.64
CSMD3-210ENST00000534172 MYLIPQ8WY64 445 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 PTPRN2Q92932 1015 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 KISS1RQ969F8 398 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-210ENST00000534172 ASIC4Q96FT7 647 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 ESYT3A0FGR9 886 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 PLS3P13797 630 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 JUNBP17275 347 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-210ENST00000534172 NFXL1Q6ZNB6 911 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 SLCO6A1Q86UG4 719 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 IFNL3Q8IZI9 196 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 TMEM145Q8NBT3 493 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 PANK1Q8TE04 598 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 FRS2Q8WU20 508 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 HHIPL1Q96JK4 782 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 MCMBPQ9BTE3 642 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 ADGRE2Q9UHX3 823 aa4.83□□□□□ -1.64
CSMD3-210ENST00000534172 PRKAB1Q9Y478 270 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms