RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 CPXCR1Q8N123 301 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 ANKRD35Q8N283 1001 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 FAM122AQ96E09 287 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 INTS4Q96HW7 963 aaKnown RBP9.61□□□□□ -0.87
NEDD8-207ENST00000533242 HAUS7Q99871 368 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 RBSNQ9H1K0 784 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 SLC28A3Q9HAS3 691 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 YBX2Q9Y2T7 364 aaKnown RBP9.61□□□□□ -0.87
NEDD8-207ENST00000533242 ST3GAL1Q11201 340 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 DNAH12Q6ZR08 3092 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 BOLA2Q9H3K6 86 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 HIPK3Q9H422 1215 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 SLC38A10Q9HBR0 1119 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 RAVER2Q9HCJ3 691 aaKnown RBP9.6□□□□□ -0.87
NEDD8-207ENST00000533242 DIAPH3Q9NSV4 1193 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 FEM1BQ9UK73 627 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 SYNPO2Q9UMS6 1093 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 IGKV6D-41A0A0C4DH26 115 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 A0A0D9SFI3 127 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 GADD45BO75293 160 aaPredicted RBP9.6□□□□□ -0.87
NEDD8-207ENST00000533242 FDX1P10109 184 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 CASTP20810 708 aaKnown RBP9.6□□□□□ -0.87
NEDD8-207ENST00000533242 PCDHA11Q9Y5I1 949 aa9.6□□□□□ -0.87
NEDD8-207ENST00000533242 ASTN1O14525 1302 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 EPB41L2O43491 1005 aaKnown RBP9.59□□□□□ -0.87
NEDD8-207ENST00000533242 ZEB2O60315 1214 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 NASPP49321 788 aaPredicted RBP9.59□□□□□ -0.87
NEDD8-207ENST00000533242 BEX3Q00994 111 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 TNFAIP2Q03169 654 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 NMIQ13287 307 aaPredicted RBP9.59□□□□□ -0.87
NEDD8-207ENST00000533242 AAK1Q2M2I8 961 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 GIMAP6Q6P9H5 292 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 CCDC144CPQ8IYA2 1237 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 RPUSD2Q8IZ73 545 aaKnown RBP9.59□□□□□ -0.87
NEDD8-207ENST00000533242 MKL1Q969V6 931 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 NOC4LQ9BVI4 516 aaKnown RBP9.59□□□□□ -0.87
NEDD8-207ENST00000533242 C1QTNF1Q9BXJ1 281 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 MKNK2Q9HBH9 465 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 LCTP09848 1927 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 MYO9BQ13459 2157 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 SYCE3A1L190 88 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 ASB14A6NK59 587 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 BMP1P13497 986 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 ITGA7Q13683 1181 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 NECTIN1Q15223 517 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 ZNF589Q86UQ0 364 aaPredicted RBP9.59□□□□□ -0.87
NEDD8-207ENST00000533242 FAM133AQ8N9E0 248 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 KIFC2Q96AC6 838 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 AP5M1Q9H0R1 490 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 CLIP2Q9UDT6 1046 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 GNEQ9Y223 722 aaKnown RBP9.59□□□□□ -0.87
NEDD8-207ENST00000533242 SLC4A7Q9Y6M7 1214 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 TTC28Q96AY4 2481 aa9.59□□□□□ -0.87
NEDD8-207ENST00000533242 UMODL1Q5DID0 1318 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 FSCN1Q16658 493 aaKnown RBP9.58□□□□□ -0.88
NEDD8-207ENST00000533242 TKFCQ3LXA3 575 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 PPP2R2DQ66LE6 453 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 CXCL17Q6UXB2 119 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 KIAA1211Q6ZU35 1233 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 OTOP2Q7RTS6 562 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 GMCL1P1Q8NEA9 526 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 EVI5LQ96CN4 794 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 JAKMIP1Q96N16 626 aaKnown RBP9.58□□□□□ -0.88
NEDD8-207ENST00000533242 STRBPQ96SI9 672 aaKnown RBP9.58□□□□□ -0.88
NEDD8-207ENST00000533242 PUS7LQ9H0K6 701 aaKnown RBP9.58□□□□□ -0.88
NEDD8-207ENST00000533242 ACAD9Q9H845 621 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 Q9Y3F1 56 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 TANC1Q9C0D5 1861 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 CCDC171Q6TFL3 1326 aa9.58□□□□□ -0.88
NEDD8-207ENST00000533242 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.57□□□□□ -0.88
NEDD8-207ENST00000533242 POU3F3P20264 500 aaPredicted RBP9.57□□□□□ -0.88
NEDD8-207ENST00000533242 RABGGTBP53611 331 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 TLK2Q86UE8 772 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 TCEANC2Q96MN5 208 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 WNT8AQ9H1J5 351 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 ARIH1Q9Y4X5 557 aaPredicted RBP9.57□□□□□ -0.88
NEDD8-207ENST00000533242 RBM8AQ9Y5S9 174 aaKnown RBP9.57□□□□□ -0.88
NEDD8-207ENST00000533242 SCN5AQ14524 2016 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 GRIN2DO15399 1336 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 SOWAHBA6NEL2 793 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 GSG1L2A8MUP6 293 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 PFKMP08237 780 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 CCL23P55773 120 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 CNTN2Q02246 1040 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 IQSEC1Q6DN90 963 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 KCNB2Q92953 911 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 ZNF287Q9HBT7 754 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 LIMCH1Q9UPQ0 1083 aa9.57□□□□□ -0.88
NEDD8-207ENST00000533242 PLIN4Q96Q06 1357 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 MINDY4BA8MYZ0 360 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 ESPNB1AK53 854 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 B4GALT4O60513 344 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 BMP3P12645 472 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 SMPD1P17405 629 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 SYT1P21579 422 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 CREB3L3Q68CJ9 461 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 SLFN13Q68D06 897 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 FAM160B2Q86V87 743 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 CCDC83Q8IWF9 413 aa9.56□□□□□ -0.88
NEDD8-207ENST00000533242 ZNF444Q8N0Y2 327 aaPredicted RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms