RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 KLF18A0A0U1RQI7 1052 aa17.43■□□□□ 0.38
CPSF1-208ENST00000532560 ANAPC15P60006 121 aa17.43■□□□□ 0.38
CPSF1-208ENST00000532560 GHRHRQ02643 423 aa17.43■□□□□ 0.38
CPSF1-208ENST00000532560 RUFY3Q7L099 469 aa17.43■□□□□ 0.38
CPSF1-208ENST00000532560 SRBD1Q8N5C6 995 aaKnown RBP17.43■□□□□ 0.38
CPSF1-208ENST00000532560 MORC4Q8TE76 937 aa17.43■□□□□ 0.38
CPSF1-208ENST00000532560 RRP36Q96EU6 259 aaKnown RBP17.43■□□□□ 0.38
CPSF1-208ENST00000532560 ABHD16BQ9H3Z7 469 aa17.43■□□□□ 0.38
CPSF1-208ENST00000532560 ADD3Q9UEY8 706 aaKnown RBP17.43■□□□□ 0.38
CPSF1-208ENST00000532560 NID2Q14112 1375 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 GOLGA8AA7E2F4 631 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 GOLGA8BA8MQT2 603 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 OPLAHO14841 1288 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 AKR1A1P14550 325 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 CALML3P27482 149 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 MNX1P50219 401 aaPredicted RBP17.42■□□□□ 0.38
CPSF1-208ENST00000532560 ALDH5A1P51649 535 aaPredicted RBP17.42■□□□□ 0.38
CPSF1-208ENST00000532560 ACVR2BQ13705 512 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 RTN1Q16799 776 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 DNERQ8NFT8 737 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 BRF1Q92994 677 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 PURBQ96QR8 312 aaKnown RBP17.42■□□□□ 0.38
CPSF1-208ENST00000532560 KATNBL1Q9H079 304 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 SEC63Q9UGP8 760 aaKnown RBP17.42■□□□□ 0.38
CPSF1-208ENST00000532560 ZHX1Q9UKY1 873 aaPredicted RBP17.42■□□□□ 0.38
CPSF1-208ENST00000532560 CYP46A1Q9Y6A2 500 aa17.42■□□□□ 0.38
CPSF1-208ENST00000532560 HSD17B4P51659 736 aa17.41■□□□□ 0.38
CPSF1-208ENST00000532560 APOBRQ0VD83 1088 aa17.41■□□□□ 0.38
CPSF1-208ENST00000532560 PPP2R5BQ15173 497 aa17.41■□□□□ 0.38
CPSF1-208ENST00000532560 SAMD3Q8N6K7 520 aa17.41■□□□□ 0.38
CPSF1-208ENST00000532560 IL17RAQ96F46 866 aa17.41■□□□□ 0.38
CPSF1-208ENST00000532560 RARBP10826 455 aa17.4■□□□□ 0.38
CPSF1-208ENST00000532560 EDNRBP24530 442 aa17.4■□□□□ 0.38
CPSF1-208ENST00000532560 EVCP57679 992 aa17.4■□□□□ 0.38
CPSF1-208ENST00000532560 C8orf34Q49A92 452 aa17.4■□□□□ 0.38
CPSF1-208ENST00000532560 CMTR1Q8N1G2 835 aaKnown RBP17.4■□□□□ 0.38
CPSF1-208ENST00000532560 SYTL5Q8TDW5 730 aaPredicted RBP17.4■□□□□ 0.38
CPSF1-208ENST00000532560 DIS3LQ8TF46 1054 aaKnown RBP17.4■□□□□ 0.38
CPSF1-208ENST00000532560 TBC1D5Q92609 795 aa17.4■□□□□ 0.38
CPSF1-208ENST00000532560 MPHOSPH6Q99547 160 aaKnown RBP17.4■□□□□ 0.38
CPSF1-208ENST00000532560 UPF3BQ9BZI7 483 aaKnown RBP17.4■□□□□ 0.38
CPSF1-208ENST00000532560 MAP3K20Q9NYL2 800 aaKnown RBP17.4■□□□□ 0.38
CPSF1-208ENST00000532560 FAM184BQ9ULE4 1060 aa17.4■□□□□ 0.38
CPSF1-208ENST00000532560 MKI67P46013 3256 aaKnown RBP17.4■□□□□ 0.38
CPSF1-208ENST00000532560 CNTNAP5Q8WYK1 1306 aa17.4■□□□□ 0.38
CPSF1-208ENST00000532560 METAP2P50579 478 aaKnown RBP eCLIP17.39■□□□□ 0.377e-8■■■□□ 16.9
CPSF1-208ENST00000532560 FUT2Q10981 343 aa17.39■□□□□ 0.37
CPSF1-208ENST00000532560 TOB2Q14106 344 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-208ENST00000532560 ANO1Q5XXA6 986 aa17.39■□□□□ 0.37
CPSF1-208ENST00000532560 NECAB2Q7Z6G3 386 aa17.39■□□□□ 0.37
CPSF1-208ENST00000532560 PIBF1Q8WXW3 757 aa17.39■□□□□ 0.37
CPSF1-208ENST00000532560 PAWRQ96IZ0 340 aaKnown RBP17.39■□□□□ 0.37
CPSF1-208ENST00000532560 VTA1Q9NP79 307 aa17.39■□□□□ 0.37
CPSF1-208ENST00000532560 FAM217BQ9NTX9 383 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-208ENST00000532560 COL20A1Q9P218 1284 aa17.39■□□□□ 0.37
CPSF1-208ENST00000532560 TNRC18O15417 2968 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-208ENST00000532560 CCDC196A0A1B0GTZ2 297 aa17.38■□□□□ 0.37
CPSF1-208ENST00000532560 B4DLN1 442 aa17.38■□□□□ 0.37
CPSF1-208ENST00000532560 DNM1LO00429 736 aa17.38■□□□□ 0.37
CPSF1-208ENST00000532560 SEC24BO95487 1268 aa17.38■□□□□ 0.37
CPSF1-208ENST00000532560 CFBP00751 764 aa17.38■□□□□ 0.37
CPSF1-208ENST00000532560 MRPL12P52815 198 aaKnown RBP17.38■□□□□ 0.37
CPSF1-208ENST00000532560 CCDC144BQ3MJ40 725 aa17.38■□□□□ 0.37
CPSF1-208ENST00000532560 FBXO16Q8IX29 292 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-208ENST00000532560 ARRDC4Q8NCT1 418 aa17.38■□□□□ 0.37
CPSF1-208ENST00000532560 NAP1L2Q9ULW6 460 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-208ENST00000532560 DDX49Q9Y6V7 483 aaKnown RBP17.38■□□□□ 0.37
CPSF1-208ENST00000532560 DUSP11O75319 330 aaKnown RBP17.37■□□□□ 0.37
CPSF1-208ENST00000532560 COL6A1P12109 1028 aa17.37■□□□□ 0.37
CPSF1-208ENST00000532560 CDC27P30260 824 aa17.37■□□□□ 0.37
CPSF1-208ENST00000532560 CCDC82Q8N4S0 544 aa17.37■□□□□ 0.37
CPSF1-208ENST00000532560 NSUN6Q8TEA1 469 aaKnown RBP17.37■□□□□ 0.37
CPSF1-208ENST00000532560 LENG1Q96BZ8 264 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-208ENST00000532560 HTATIP2Q9BUP3 242 aa17.37■□□□□ 0.37
CPSF1-208ENST00000532560 C11orf49Q9H6J7 331 aa17.37■□□□□ 0.37
CPSF1-208ENST00000532560 XPNPEP3Q9NQH7 507 aa17.37■□□□□ 0.37
CPSF1-208ENST00000532560 GCOM1H8Y6P7 765 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-208ENST00000532560 ADCY6O43306 1168 aa17.36■□□□□ 0.37
CPSF1-208ENST00000532560 POLR2MP0CAP2 368 aa17.36■□□□□ 0.37
CPSF1-208ENST00000532560 PDE4DQ08499 809 aa17.36■□□□□ 0.37
CPSF1-208ENST00000532560 TAPT1Q6NXT6 567 aa17.36■□□□□ 0.37
CPSF1-208ENST00000532560 TAAR1Q96RJ0 339 aa17.36■□□□□ 0.37
CPSF1-208ENST00000532560 IWS1Q96ST2 819 aa17.36■□□□□ 0.37
CPSF1-208ENST00000532560 RMDN3Q96TC7 470 aa17.36■□□□□ 0.37
CPSF1-208ENST00000532560 PDRG1Q9NUG6 133 aa17.36■□□□□ 0.37
CPSF1-208ENST00000532560 PDE4DIPQ5VU43 2346 aa17.36■□□□□ 0.37
CPSF1-208ENST00000532560 hCG_1642624A0A1W2PR95 340 aa17.35■□□□□ 0.37
CPSF1-208ENST00000532560 KBTBD13C9JR72 458 aa17.35■□□□□ 0.37
CPSF1-208ENST00000532560 hCG_1984214I3L0E3 225 aa17.35■□□□□ 0.37
CPSF1-208ENST00000532560 ADAMTS4O75173 837 aa17.35■□□□□ 0.37
CPSF1-208ENST00000532560 PDIA3P30101 505 aaKnown RBP17.35■□□□□ 0.37
CPSF1-208ENST00000532560 HOXA13P31271 388 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-208ENST00000532560 ADD1P35611 737 aaKnown RBP17.35■□□□□ 0.37
CPSF1-208ENST00000532560 LRRC41Q15345 812 aa17.35■□□□□ 0.37
CPSF1-208ENST00000532560 EEPD1Q7L9B9 569 aa17.35■□□□□ 0.37
CPSF1-208ENST00000532560 ZNF713Q8N859 430 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-208ENST00000532560 UPF3AQ9H1J1 476 aaKnown RBP17.35■□□□□ 0.37
CPSF1-208ENST00000532560 ALDH8A1Q9H2A2 487 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-208ENST00000532560 PXMP2Q9NR77 195 aa17.35■□□□□ 0.37
CPSF1-208ENST00000532560 SYNRGQ9UMZ2 1314 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms