RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TBC1D10CQ8IV04 446 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 CLEC4DQ8WXI8 215 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 GPCPD1Q9NPB8 672 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 PNMA2Q9UL42 364 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 WDR19Q8NEZ3 1342 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 RBM47A0AV96 593 aaKnown RBP13.35□□□□□ -0.27
VPS28-214ENST00000531032 PTPDC1A2A3K4 754 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 TRIM6-TRIM34B2RNG4 842 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 CYP2C18P33260 490 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 MFAP1P55081 439 aaKnown RBP13.35□□□□□ -0.27
VPS28-214ENST00000531032 GRIN2CQ14957 1233 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 SLC30A10Q6XR72 485 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 ZNF365Q70YC5 407 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 RILPL2Q969X0 211 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 TIFAQ96CG3 184 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 HIPK3Q9H422 1215 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 OSBPL3Q9H4L5 887 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 RNF41Q9H4P4 317 aaPredicted RBP13.35□□□□□ -0.27
VPS28-214ENST00000531032 IL23AQ9NPF7 189 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 NEDD4P46934 1319 aa13.35□□□□□ -0.27
VPS28-214ENST00000531032 B4GALT4O60513 344 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 ACRP10323 421 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 SDSP20132 328 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 NT5C2P49902 561 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 PSMC6P62333 389 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 PLEKHM2Q8IWE5 1019 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 HERVK_113Q902F9 699 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 ESR2Q92731 530 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 NOC4LQ9BVI4 516 aaKnown RBP13.34□□□□□ -0.27
VPS28-214ENST00000531032 PBX4Q9BYU1 374 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 WDR11Q9BZH6 1224 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 RWDD1Q9H446 243 aaPredicted RBP13.34□□□□□ -0.27
VPS28-214ENST00000531032 ZNF576Q9H609 170 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 UMODL1Q5DID0 1318 aa13.34□□□□□ -0.27
VPS28-214ENST00000531032 EDNRBP24530 442 aa13.33□□□□□ -0.28
VPS28-214ENST00000531032 CALML3P27482 149 aa13.33□□□□□ -0.28
VPS28-214ENST00000531032 RPS6P62753 249 aaKnown RBP13.33□□□□□ -0.28
VPS28-214ENST00000531032 GPATCH4Q5T3I0 446 aaKnown RBP13.33□□□□□ -0.28
VPS28-214ENST00000531032 RNF207Q6ZRF8 634 aa13.33□□□□□ -0.28
VPS28-214ENST00000531032 CHD1LQ86WJ1 897 aa13.33□□□□□ -0.28
VPS28-214ENST00000531032 DGKHQ86XP1 1220 aa13.33□□□□□ -0.28
VPS28-214ENST00000531032 DNERQ8NFT8 737 aa13.33□□□□□ -0.28
VPS28-214ENST00000531032 TRPV6Q9H1D0 765 aa13.33□□□□□ -0.28
VPS28-214ENST00000531032 ALDH8A1Q9H2A2 487 aaPredicted RBP13.33□□□□□ -0.28
VPS28-214ENST00000531032 CHD9Q3L8U1 2897 aa13.33□□□□□ -0.28
VPS28-214ENST00000531032 SPTBN5Q9NRC6 3674 aaKnown RBP13.32□□□□□ -0.28
VPS28-214ENST00000531032 GRXCR1A8MXD5 290 aa13.32□□□□□ -0.28
VPS28-214ENST00000531032 ZNF213O14771 459 aa13.32□□□□□ -0.28
VPS28-214ENST00000531032 PBX2P40425 430 aa13.32□□□□□ -0.28
VPS28-214ENST00000531032 CPT1AP50416 773 aa13.32□□□□□ -0.28
VPS28-214ENST00000531032 PURAQ00577 322 aaKnown RBP13.32□□□□□ -0.28
VPS28-214ENST00000531032 NUCB1Q02818 461 aa13.32□□□□□ -0.28
VPS28-214ENST00000531032 B4GALNT3Q6L9W6 998 aa13.32□□□□□ -0.28
VPS28-214ENST00000531032 WNT8AQ9H1J5 351 aa13.32□□□□□ -0.28
VPS28-214ENST00000531032 MTIF3Q9H2K0 278 aaKnown RBP13.32□□□□□ -0.28
VPS28-214ENST00000531032 POLR3EQ9NVU0 708 aa13.32□□□□□ -0.28
VPS28-214ENST00000531032 CXXC1Q9P0U4 656 aaPredicted RBP13.32□□□□□ -0.28
VPS28-214ENST00000531032 SCN10AQ9Y5Y9 1956 aa13.32□□□□□ -0.28
VPS28-214ENST00000531032 NKRFO15226 690 aaKnown RBP eCLIP13.31□□□□□ -0.28
VPS28-214ENST00000531032 IGHDP01880 384 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 FGBP02675 491 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 GOLGA8HP0CJ92 632 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 PDE4DQ08499 809 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 CCDC178Q5BJE1 867 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 CWC27Q6UX04 472 aaKnown RBP13.31□□□□□ -0.28
VPS28-214ENST00000531032 IQCA1Q86XH1 822 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 RGS22Q8NE09 1264 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 ANKS1AQ92625 1134 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 MPHOSPH6Q99547 160 aaKnown RBP13.31□□□□□ -0.28
VPS28-214ENST00000531032 ZKSCAN3Q9BRR0 538 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 MAF1Q9H063 256 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 GBF1Q92538 1859 aa13.31□□□□□ -0.28
VPS28-214ENST00000531032 KDM4AO75164 1064 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 SUPT20HL2P0C7V6 817 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 CCL23P55773 120 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 PPP2R5BQ15173 497 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 RAB30Q15771 203 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 PNMA1Q8ND90 353 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 OR6J1Q8NGC5 347 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 SCFD2Q8WU76 684 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 VWCEQ96DN2 955 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 MTG1Q9BT17 334 aaPredicted RBP13.3□□□□□ -0.28
VPS28-214ENST00000531032 DSCC1Q9BVC3 393 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 UBA5Q9GZZ9 404 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 CPVLQ9H3G5 476 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 DIAPH3Q9NSV4 1193 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 TRMT13Q9NUP7 481 aaKnown RBP13.3□□□□□ -0.28
VPS28-214ENST00000531032 RAD50Q92878 1312 aa13.3□□□□□ -0.28
VPS28-214ENST00000531032 A6NJR5 290 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 B4DLN1 442 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 HIP1O00291 1037 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 MYL3P08590 195 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 MRPL12P52815 198 aaKnown RBP13.29□□□□□ -0.28
VPS28-214ENST00000531032 CDC37Q16543 378 aaPredicted RBP13.29□□□□□ -0.28
VPS28-214ENST00000531032 USH1GQ495M9 461 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 ASPRV1Q53RT3 343 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 BRDTQ58F21 947 aaPredicted RBP13.29□□□□□ -0.28
VPS28-214ENST00000531032 OTOP2Q7RTS6 562 aa13.29□□□□□ -0.28
VPS28-214ENST00000531032 RPUSD2Q8IZ73 545 aaKnown RBP13.29□□□□□ -0.28
VPS28-214ENST00000531032 ENAHQ8N8S7 591 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms