RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 KANSL2Q9H9L4 492 aa5□□□□□ -1.61
CD44-226ENST00000527889 DBNLQ9UJU6 430 aaKnown RBP5□□□□□ -1.61
CD44-226ENST00000527889 KCNH4Q9UQ05 1017 aa5□□□□□ -1.61
CD44-226ENST00000527889 MSRB2Q9Y3D2 182 aa5□□□□□ -1.61
CD44-226ENST00000527889 COL4A3BPQ9Y5P4 624 aa5□□□□□ -1.61
CD44-226ENST00000527889 FER1L6Q2WGJ9 1857 aa5□□□□□ -1.61
CD44-226ENST00000527889 ARFGEF1Q9Y6D6 1849 aa5□□□□□ -1.61
CD44-226ENST00000527889 TTC41PQ6P2S7 1318 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 ENC1O14682 589 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 ERC2O15083 957 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 SMAD7O15105 426 aaKnown RBP4.99□□□□□ -1.61
CD44-226ENST00000527889 PLSCR1O15162 318 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 CIAO1O76071 339 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 KIF4AO95239 1232 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 GYS1P13807 737 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 ACPPP15309 386 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 ITPKAP23677 461 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 ADORA1P30542 326 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 GRIA4P48058 902 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 TIMM10P62072 90 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 CCINQ13939 588 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 NFIXQ14938 502 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 CCDC152Q4G0S7 254 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 METTL24Q5JXM2 366 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 LDHAL6AQ6ZMR3 332 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 CCDC81Q6ZN84 652 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 KRT25Q7Z3Z0 450 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 FILIP1Q7Z7B0 1213 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 CELF2-AS1Q8N7Q2 184 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 FAM169BQ8N8A8 192 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 EDC3Q96F86 508 aaKnown RBP4.99□□□□□ -1.61
CD44-226ENST00000527889 GMCL1Q96IK5 515 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 SNX27Q96L92 541 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 NEUROD6Q96NK8 337 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 NECAB3Q96P71 396 aaPredicted RBP4.99□□□□□ -1.61
CD44-226ENST00000527889 OSMRQ99650 979 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 NYXQ9GZU5 481 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 BOLA2Q9H3K6 86 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 ZFYVE1Q9HBF4 777 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 CNNM1Q9NRU3 951 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 ECHDC1Q9NTX5 307 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 NDFIP2Q9NV92 336 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 DZANK1Q9NVP4 752 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 TFCP2L1Q9NZI6 479 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 ZFATQ9P243 1243 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 PPT2Q9UMR5 302 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 RIPOR2Q9Y4F9 1068 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 CARMIL3Q8ND23 1372 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 RTL9Q8NET4 1388 aa4.99□□□□□ -1.61
CD44-226ENST00000527889 A0A1B0GUL7 405 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 NPHP1O15259 732 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 DNAJC6O75061 913 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 GLRX3O76003 335 aaKnown RBP4.98□□□□□ -1.61
CD44-226ENST00000527889 RARAP10276 462 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 CHMLP26374 656 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 RPS26P62854 115 aaKnown RBP4.98□□□□□ -1.61
CD44-226ENST00000527889 SFSWAPQ12872 951 aaKnown RBP4.98□□□□□ -1.61
CD44-226ENST00000527889 SPRED3Q2MJR0 410 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 SLC10A5Q5PT55 438 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 MSL1Q68DK7 614 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 TTBK2Q6IQ55 1244 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 SLC51AQ86UW1 340 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 COL23A1Q86Y22 540 aaPredicted RBP4.98□□□□□ -1.61
CD44-226ENST00000527889 EXOC8Q8IYI6 725 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 CNTROBQ8N137 903 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 LILRB2Q8N423 598 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 VGLL2Q8N8G2 317 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 SH3TC2Q8TF17 1288 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 TBC1D32Q96NH3 1257 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 MPHOSPH8Q99549 860 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 LRRC3Q9BY71 257 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 C22orf23Q9BZE7 217 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 CCDC113Q9H0I3 377 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 UPF2Q9HAU5 1272 aaKnown RBP4.98□□□□□ -1.61
CD44-226ENST00000527889 METTL14Q9HCE5 456 aaKnown RBP4.98□□□□□ -1.61
CD44-226ENST00000527889 PCDH12Q9NPG4 1184 aa4.98□□□□□ -1.61
CD44-226ENST00000527889 R3HCC1Q9Y3T6 440 aaKnown RBP4.98□□□□□ -1.61
CD44-226ENST00000527889 PNPLA7Q6ZV29 1317 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 METTL12A8MUP2 240 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 HMGB1P1B2RPK0 211 aaPredicted RBP4.97□□□□□ -1.61
CD44-226ENST00000527889 SNAP23O00161 211 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 EFSO43281 561 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 BNIP3LO60238 219 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 GRIN3BO60391 1043 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 PAGE1O75459 146 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 TAF5LO75529 589 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 TRPA1O75762 1119 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 F13A1P00488 732 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 FAM157BP0CG42 384 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 HOXD8P13378 290 aaPredicted RBP4.97□□□□□ -1.61
CD44-226ENST00000527889 ATP5JP18859 108 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 SOX18P35713 384 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 IGHMBP2P38935 993 aaKnown RBP4.97□□□□□ -1.61
CD44-226ENST00000527889 GIPRP48546 466 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 LBX1P52954 281 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 CHMP4BP1P59074 171 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 RBM10P98175 930 aaKnown RBP4.97□□□□□ -1.61
CD44-226ENST00000527889 DDR1Q08345 913 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 LBRQ14739 615 aaKnown RBP4.97□□□□□ -1.61
CD44-226ENST00000527889 SF3B3Q15393 1217 aaKnown RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms