RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 PPP1R12BO60237 982 aaPredicted RBP4.54□□□□□ -1.68
CPNE3-204ENST00000517862 FAM13AO94988 1023 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 ALBP02768 609 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 EIF1AXP47813 144 aaKnown RBP4.54□□□□□ -1.68
CPNE3-204ENST00000517862 EPHA4P54764 986 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 C19orf57Q0VDD7 668 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 AAMPQ13685 434 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 MRPL58Q14197 206 aaKnown RBP4.54□□□□□ -1.68
CPNE3-204ENST00000517862 RAB30Q15771 203 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 CCL15Q16663 113 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 LEXMQ3ZCV2 418 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 PPM1JQ5JR12 505 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 NBPF6Q5VWK0 638 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 KRT40Q6A162 431 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 ATCAYQ86WG3 371 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 ABI1Q8IZP0 508 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 FAM177A1Q8N128 213 aaPredicted RBP4.54□□□□□ -1.68
CPNE3-204ENST00000517862 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.54□□□□□ -1.68
CPNE3-204ENST00000517862 BRI3BPQ8WY22 251 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 NBPF4Q96M43 638 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 DRC1Q96MC2 740 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 ZCCHC2Q9C0B9 1178 aaKnown RBP4.54□□□□□ -1.68
CPNE3-204ENST00000517862 SENP6Q9GZR1 1112 aaPredicted RBP4.54□□□□□ -1.68
CPNE3-204ENST00000517862 NKX2-4Q9H2Z4 354 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 CRISPLD1Q9H336 500 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 CACNA2D2Q9NY47 1150 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 CPA4Q9UI42 421 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 BRPF3Q9ULD4 1205 aa4.54□□□□□ -1.68
CPNE3-204ENST00000517862 ROCK1Q13464 1354 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 ADAMTS20P59510 1910 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 KLRG2A4D1S0 409 aaPredicted RBP4.53□□□□□ -1.68
CPNE3-204ENST00000517862 TNFRSF10BO14763 440 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 GPR182O15218 404 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 ATXN7O15265 892 aaPredicted RBP4.53□□□□□ -1.68
CPNE3-204ENST00000517862 TREHO43280 583 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 FZD6O60353 706 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 IGLV1-40P01703 118 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 LMNAP02545 664 aaKnown RBP4.53□□□□□ -1.68
CPNE3-204ENST00000517862 LDHBP07195 334 aaKnown RBP4.53□□□□□ -1.68
CPNE3-204ENST00000517862 PLA2G2AP14555 144 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 NPR3P17342 541 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 POU3F3P20264 500 aaPredicted RBP4.53□□□□□ -1.68
CPNE3-204ENST00000517862 FLT3LGP49771 235 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 FCGRTP55899 365 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 ZP2Q05996 745 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 EPHA10Q5JZY3 1008 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 COX20Q5RI15 118 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 C16orf46Q6P387 395 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 GLIS3Q8NEA6 775 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 SUPT20HQ8NEM7 779 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 DUSP9Q99956 384 aaKnown RBP4.53□□□□□ -1.68
CPNE3-204ENST00000517862 RBCK1Q9BYM8 510 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 PARP2Q9UGN5 583 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 ATP11BQ9Y2G3 1177 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 USP3Q9Y6I4 520 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 RALGAPA2Q2PPJ7 1873 aa4.53□□□□□ -1.68
CPNE3-204ENST00000517862 FREM2Q5SZK8 3169 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 RELNP78509 3460 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 RFXAPO00287 272 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 C1QTNF9P0C862 333 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 MAPTP10636 758 aaKnown RBP4.52□□□□□ -1.69
CPNE3-204ENST00000517862 KCNA5P22460 613 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 RTP1P59025 263 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 GNASQ5JWF2 1037 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 SH3PXD2AQ5TCZ1 1133 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 TMEM214Q6NUQ4 689 aaKnown RBP4.52□□□□□ -1.69
CPNE3-204ENST00000517862 C17orf99Q6UX52 265 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 UNQ6494/PRO21346Q6UXR6 183 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 NBPF5PQ86XG9 351 aaPredicted RBP4.52□□□□□ -1.69
CPNE3-204ENST00000517862 SLC9A9Q8IVB4 645 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 MEGF10Q96KG7 1140 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 RTKNQ9BST9 563 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 TMX4Q9H1E5 349 aaPredicted RBP4.52□□□□□ -1.69
CPNE3-204ENST00000517862 UBE2ZQ9H832 354 aaPredicted RBP4.52□□□□□ -1.69
CPNE3-204ENST00000517862 LRFN2Q9ULH4 789 aa4.52□□□□□ -1.69
CPNE3-204ENST00000517862 ZNF536O15090 1300 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 SETD2Q9BYW2 2564 aaPredicted RBP4.51□□□□□ -1.69
CPNE3-204ENST00000517862 ZBTB39O15060 712 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 NOS3P29474 1203 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 SHC2P98077 582 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 EHHADHQ08426 723 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 RAD51AP2Q09MP3 1159 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 KIAA2012Q0VF49 1180 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 COL19A1Q14993 1142 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 DBX2Q6ZNG2 339 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 DCLK2Q8N568 766 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 TMEM87AQ8NBN3 555 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 BBC3Q96PG8 261 aaPredicted RBP4.51□□□□□ -1.69
CPNE3-204ENST00000517862 MRS2Q9HD23 443 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 VTI1BQ9UEU0 232 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 PRKAG3Q9UGI9 489 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 SPG7Q9UQ90 795 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 RAI2Q9Y5P3 530 aa4.51□□□□□ -1.69
CPNE3-204ENST00000517862 DOCK3Q8IZD9 2030 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 ADARB2-AS1A8MUL3 147 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 SCAMP3O14828 347 aaKnown RBP4.5□□□□□ -1.69
CPNE3-204ENST00000517862 BACH1O14867 736 aa4.5□□□□□ -1.69
CPNE3-204ENST00000517862 KHNYNO15037 678 aaKnown RBP4.5□□□□□ -1.69
CPNE3-204ENST00000517862 SMARCA5O60264 1052 aaPredicted RBP4.5□□□□□ -1.69
CPNE3-204ENST00000517862 LILRB5O75023 590 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms